Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g399 ATGGCTGATCCAAATACATCAGCTTTGATAGTATCTTCAGAATCCTCTGAACAAAGTGGAACACATATGATGAATCCAAGTGCGAATCCTCTTCAACCTCTTCTAAATCAGCAAGGTCGAACCTCCCCACATGGTTCTGTGGCTATCCTTTGGGACATTGAGAATTGCCCTGTCCCAAGTGATGTGCGGCCTGAAGATGTAGCTGGCAATATCCGAATGGCACTGCGTGTCCATCCTGTAATTAGAGGTGCTGTAACCATGTTTTCTGCATATGGGGATTTTAATGCCTTTCCCAGGCGGCTCAGAGAGGGCTGCCAGAGAACAGGAGTCAAACTCATAGATGTTCCAAATGGGAGGAAGGATGCAGCTGACAAAGCTATCTTAGTTGACATGTTCCTGTTTGCCCTTGACAATCCTCCACCTTCTTCCATCATGCTGATATCTGGGGATGTTGATTTTGCTCCTGCACTTCACATACTTGGTCAACGTGGATATACTGTCATTCTAGTAATTCCTTCTGGAGTGGGTGTGGCATCTGCCCTGTGCAATGCTGGAAGGTTTGTTTGGGACTGGCCTAGTGTGGCTCGTGGGGAAGGCTTTGTGCCTCCCACCAAGGTTTTGATCCCCCCTCATGGACAAAATGAAGAAGAGGCAATTGTATATAGGGGAATGTCACAAGGACCTATTTCTTATGGTGAACAAAATGAATCCACCTTGTGGGTGCAGCCTGGGGACCTAAATGGACTAAAGGCACAGCTGGTAAAACTGCTTGAACTATCAGGAGGGTGCCTGCCTCTTGCCCGCATTCCTTCTGACTACCAGAAACTCTTTGGACGGCCTCTTTATGTTTCAGAATATGGAGCTTTCAAGCTTGTGAATCTTTTCAAGAAGATGGCTGATACATTGGCCGTAGAGGGGAAGGGCCATAGGAAGCTTGTCTACCTCCGAAACTCGAAGGCTGGCCCAAGTGCTCCTCCATTGATAATGGCAAGGAAGGAGAAGAAAGGGAAGGGGATCCAGGAGGAGAACATGGATAATATCACTGGCTGTGGGTCTTCAGATGAATGTGAAATCAATGATCAAAATATTGAACAGTTCAAACATGAGTTGCAAGAGATCCTAGTGAGCTATTCTTGTCGGATTTTCCTGGGTTGTTTTGAGGCAATATACCAACAAAGGTACAAGAAACCACTGGACTATCGAAAGTTTGGTGTGAATGAGTTAGAGGGGTTGTTTGACAAGGTGAAGGATGTTGTCGTGTTGCATGAGGAACCAGTAACCAAGAGGAAGTTCCTTGATGCAGTTGGTGGCTAG 1314 46.35 MADPNTSALIVSSESSEQSGTHMMNPSANPLQPLLNQQGRTSPHGSVAILWDIENCPVPSDVRPEDVAGNIRMALRVHPVIRGAVTMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPSGVGVASALCNAGRFVWDWPSVARGEGFVPPTKVLIPPHGQNEEEAIVYRGMSQGPISYGEQNESTLWVQPGDLNGLKAQLVKLLELSGGCLPLARIPSDYQKLFGRPLYVSEYGAFKLVNLFKKMADTLAVEGKGHRKLVYLRNSKAGPSAPPLIMARKEKKGKGIQEENMDNITGCGSSDECEINDQNIEQFKHELQEILVSYSCRIFLGCFEAIYQQRYKKPLDYRKFGVNELEGLFDKVKDVVVLHEEPVTKRKFLDAVGG* 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3854896 3866036 - Vvi3g399 Vvi3g399 784074

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g399 437 MobiDBLite consensus disorder prediction 1 40 - -
Vvi3g399 437 PANTHER LIMKAIN B LKAP 357 432 IPR024768 GO:0005777|GO:0010468|GO:1903231
Vvi3g399 437 CDD LOTUS 363 425 - -
Vvi3g399 437 Gene3D - 358 429 IPR041966 -
Vvi3g399 437 Gene3D - 245 314 IPR041966 -
Vvi3g399 437 PANTHER LIMKAIN B LKAP 1 356 IPR024768 GO:0005777|GO:0010468|GO:1903231
Vvi3g399 437 PANTHER ZINC FINGER, CCHC-TYPE, MEIOSIS ARREST FEMALE PROTEIN 1, PIN DOMAIN-LIKE PROTEIN-RELATED 357 432 - -
Vvi3g399 437 Pfam OST-HTH/LOTUS domain 246 313 IPR025605 -
Vvi3g399 437 Pfam OST-HTH/LOTUS domain 363 425 IPR025605 -
Vvi3g399 437 CDD LOTUS 246 315 - -
Vvi3g399 437 ProSiteProfiles OST-type HTH domain profile. 362 436 IPR025605 -
Vvi3g399 437 Pfam NYN domain 47 187 IPR021139 GO:0004540
Vvi3g399 437 PANTHER ZINC FINGER, CCHC-TYPE, MEIOSIS ARREST FEMALE PROTEIN 1, PIN DOMAIN-LIKE PROTEIN-RELATED 1 356 - -
Vvi3g399 437 ProSiteProfiles OST-type HTH domain profile. 245 319 IPR025605 -
Vvi3g399 437 CDD PIN_limkain_b1_N_like 47 172 - -
Vvi3g399 437 Gene3D - 40 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g399 - - - vvi:104878785 834.713
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g399 Vvi4g854 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g399 . . . . Bpe07g00379 . . Bma12g00451 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme11g00086
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005957 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 4 1 39