Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g4 ATGGCTACATATTACCCTAGTTCAAATAATCAAAGAGATGCTGCCCCTATGCATTATTTAAGGGAACCTTTGCCCACATCATATTCGGAAGTTCCTGTTCTTCCCACTAATATGATGTATATGAGCTACCCATCGTCTTCTGGGTCATACTCGGACACATTGGCTGGGAATGCCCAGCAGCACAACCACAACTGCATTGAAATTCCATCTGTGGCAGCTTCCGACTCCACCCAACCGCAGCATGAAATCTTGTCAAGCCTTAGTGGGTCACATATAGTGGAACATGATTTCAGCGCATGGAGGGATGGTAAAAATGAGATGCTAGTTATGAACTCACTGGGTGGCCCTGCAAGCCTTCTTCACACCGGGCAGCATTTGCAGGCTCAGGGCTTGTCCCTTAGTCTTGGCACACAAATCCCCTCAGGAATCCAAATTCCTTCCATTCAATATCGGAATCCCAATCAGGGTTTCACCTCATTCTTGAGTCCTACTTCATCAGTGTCGGGTGAAGTGGATCCATCTTCATATGGAATGTCAAGTATTGCGAGGACCATTCCCCATTCCAAGTACTTAAAGGCAGCCCAGCAACTGCTTGATGAAGTTGTTAATGTTCGAAAAGCTTTGAAGCAGCCTGATTCTGAGAAAAACCAAAACATACATGAGCTTTGGAAGGCTTCAAACCCTCAAGAGCCTGTCAGCAATTCCTCAAGTGAGCTTTCTCCTGCTGAAAGACAGGATTTACAAAACAAGTTGACAAAGCTTTTGGCCATGTTAGATGAGGTTGATAGAAGGTACAAACAGTATTATCACCAGATGCAGATTGTGGTATCATCATTTGATGTGATAGCAGGATCTGGGGCTGCAAAACCCTACACAGCACTTGCCCTCCAGACAATTTCTCGCCACTTCCGCTGCTTGCGTGATGCAATCACTGGCCAGATTCGAGCAACGCGAAGAAGTCTTGGGGAGCAAGATACTTCAGGAAACGGCAAAGGGGTTGGAATATCTCGCCTGCGATATGTGGACCAGCAGCTCAGGCAACAGAGGGCTCTTCAGCAGCTTGGTATGATGCAACAACATGCCTGGAGGCCACAGAGGGGGCTGCCTGAAAGCTCTGTTTCTATTCTTCGTGCTTGGCTATTTGAGCACTTCCTTCATCCCTACCCAAAAGATTCTGATAAGATCATGCTGGCAAGGCAGACAGGCTTGACCAGGAGTCAGGTCTCAAACTGGTTTATAAATGCGCGGGTGCGTCTCTGGAAGCCCATGGTGGAAGAGATGTACAAAGAAGAGATAGGTGATGCAGATATGGACTCTAATTCTTCGTCCGAAAATGCACCCAAAGCGACAAAAAGTGATATCAGGGCATCTGAGGAAAGAGGTGATGATTTTCAGCCAAGCACAACTTCCACGGAATGCAGCAGCCTCTTCCCAGATGGCATTGTTCAGTCTGATGGGGGCAGCGATAGGTTCATGGCAGCCGCTGCTGCAGCATACCACATGTCAGAGTTGGGGAGGTTCGGAAGTGGAACTGGGGTATCTCTTACATTGGGGTTGCAGCATTGCGAGGGAGGCAGCTTACCCATTTCCAATGGAGGTCATCACAGTTTTGTGGGTATGCGGGGGGCCGATATGTACAACCCAGCAGCTTCTTCAGTGGGGACTGACACGGCCGATTTCGACTGCATGGATCCTGGCAACCGGCAGCACAGATTCAGCTCCTCCCATCTATTACATGATTTTGTAGCCTGA 1752 48.29 MATYYPSSNNQRDAAPMHYLREPLPTSYSEVPVLPTNMMYMSYPSSSGSYSDTLAGNAQQHNHNCIEIPSVAASDSTQPQHEILSSLSGSHIVEHDFSAWRDGKNEMLVMNSLGGPASLLHTGQHLQAQGLSLSLGTQIPSGIQIPSIQYRNPNQGFTSFLSPTSSVSGEVDPSSYGMSSIARTIPHSKYLKAAQQLLDEVVNVRKALKQPDSEKNQNIHELWKASNPQEPVSNSSSELSPAERQDLQNKLTKLLAMLDEVDRRYKQYYHQMQIVVSSFDVIAGSGAAKPYTALALQTISRHFRCLRDAITGQIRATRRSLGEQDTSGNGKGVGISRLRYVDQQLRQQRALQQLGMMQQHAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEIGDADMDSNSSSENAPKATKSDIRASEERGDDFQPSTTSTECSSLFPDGIVQSDGGSDRFMAAAAAAYHMSELGRFGSGTGVSLTLGLQHCEGGSLPISNGGHHSFVGMRGADMYNPAASSVGTDTADFDCMDPGNRQHRFSSSHLLHDFVA* 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 40974 48142 - Vvi3g4 Vvi3g4 783679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g4 583 MobiDBLite consensus disorder prediction 432 479 - -
Vvi3g4 583 Pfam Associated with HOX 185 311 IPR006563 -
Vvi3g4 583 ProSiteProfiles 'Homeobox' domain profile. 359 422 IPR001356 GO:0003677
Vvi3g4 583 MobiDBLite consensus disorder prediction 224 244 - -
Vvi3g4 583 Gene3D - 357 436 - -
Vvi3g4 583 MobiDBLite consensus disorder prediction 463 478 - -
Vvi3g4 583 CDD homeodomain 362 423 IPR001356 GO:0003677
Vvi3g4 583 Coils Coil 244 264 - -
Vvi3g4 583 Pfam Homeobox KN domain 379 418 IPR008422 GO:0003677|GO:0006355
Vvi3g4 583 SUPERFAMILY Homeodomain-like 363 429 IPR009057 -
Vvi3g4 583 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 58 534 - -
Vvi3g4 583 SMART prehox3 179 312 IPR006563 -
Vvi3g4 583 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 58 534 - -
Vvi3g4 583 SMART HOX_1 362 426 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g4 Vvi18g1007 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14652 PF07526 POX 3.60E-50 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g4 - - vvi:100262246 1036.94