Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g400 ATGTTTACTGGATTTGGGTTTTATAGAAATAAAATTCAAATCTTGGTTCAAAAAAAAAAAAAAAAAAAAAACACGAAACCGTGGTGGGGCCCAATGTTTCGAAGCTCGGAAATCAGAAAAAACGTGCTCCATTCTGACTTTCCCATTCGTTTCTCACTCCACCCACCTCTCTCTCGTTTTCGATTCCCCCAAACGCCCCTCTCTGGTCTCTGCTCAACCATGGCTTCTTGCTCCAATCCTCCTCCTCTCTCTTCACCGCTCTCCCCTTCTCTCCAAACCCGAAAACTCTTCGCTCCTCTCTCCTATCCTCGCTCCGGCGGACCCTCCTATGCTCTTCATTTCCACGCCAAAAGGGGCATTAGGTTTTCAAACCCACCTCTCCGTCTCAAGGTTCTTTGCTCCGCTGATTACGACAAAGCTGCAGTGGTCACTGGAGACTCATGGGAAAAATCAATTCTGAACAGCGAAATCCCTGTCCTGGTTGAATTTTATGCTAGTTGGTGTGGGCCCTGCAGGATGGTTCACCGGGTGATAGATGAGATTGCAGAAGATTATGCAGGGAGACTTAAATGCTTTGTGCTGAACACAGACCATGACTTGCATATTGCTGAGAACTATGAAATTAAGGCTGTGCCAGTGGTTTTGCTGTTTAAAAATGGAGAGAAACGTGAATCTGTAGTTGGAACCATGCCTAAGGAGTTCTATGTGGCTGCCATTGAGAGGGTCCTCTCATCTTAA 738 46.07 MFTGFGFYRNKIQILVQKKKKKKNTKPWWGPMFRSSEIRKNVLHSDFPIRFSLHPPLSRFRFPQTPLSGLCSTMASCSNPPPLSSPLSPSLQTRKLFAPLSYPRSGGPSYALHFHAKRGIRFSNPPLRLKVLCSADYDKAAVVTGDSWEKSILNSEIPVLVEFYASWCGPCRMVHRVIDEIAEDYAGRLKCFVLNTDHDLHIAENYEIKAVPVVLLFKNGEKRESVVGTMPKEFYVAAIERVLSS* 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3866769 3872492 - Vvi3g400 Vvi3g400 784075

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g400 245 PANTHER THIOREDOXIN M3, CHLOROPLASTIC 124 244 - -
Vvi3g400 245 PANTHER GEO12009P1 124 244 - -
Vvi3g400 245 CDD TRX_family 146 240 - -
Vvi3g400 245 SUPERFAMILY Thioredoxin-like 137 244 IPR036249 -
Vvi3g400 245 PRINTS Thioredoxin family signature 159 167 - -
Vvi3g400 245 PRINTS Thioredoxin family signature 167 176 - -
Vvi3g400 245 PRINTS Thioredoxin family signature 207 218 - -
Vvi3g400 245 ProSitePatterns Thioredoxin family active site. 160 178 IPR017937 -
Vvi3g400 245 ProSiteProfiles Thioredoxin domain profile. 129 244 IPR013766 -
Vvi3g400 245 Gene3D Glutaredoxin 141 244 - -
Vvi3g400 245 Pfam Thioredoxin 141 239 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g400 K03671 trxA; thioredoxin 1 - vvi:100248705 217.238
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g400 . . . . . . . . . Cmo11g01367 . . . . . Cpe04g00283 . . . . . . . . Cla02g00604 Cam02g0633 Cec02g0633 Cco02g0652 Clacu02g0637 Cmu02g0633 Cre02g0957 . . . . . . . Cme01g00054 Blo04g00487 . . Bda14g00516 Bpe15g00898 . Bma03g00517 . . . . . . Car11g01093 . . . . . . . . . . . . . . . . . . . Chy01g00058 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008931 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 1 3 1 1 1 1 1 1 1 32