Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g403 ATGATTAAAAACAGAGAATCAGCCGCAAGATCACGAGCTCGTAAGCAGGCTTATACCTTGGAACTTGAAATGGAAGTTGCAAAACTGAAAGAGGCGAATGAAGAATTGCAGAAGAAACAGGCGGATATGGAAGTCCAGAAAAATCAGATCTTGGAGACAATTCGGCAAAGGGGAGGTAAAAGACTCTGCTTGAGAAGAACACTAACAGGCCCTTGGTAG 219 43.38 MIKNRESAARSRARKQAYTLELEMEVAKLKEANEELQKKQADMEVQKNQILETIRQRGGKRLCLRRTLTGPW* 73
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3887066 3889560 - Vvi3g403 Vvi3g403 784078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g403 72 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 1 72 IPR043452 GO:0003700|GO:0045893
Vvi3g403 72 Pfam bZIP transcription factor 1 44 IPR004827 GO:0003700|GO:0006355
Vvi3g403 72 SMART brlzneu 1 56 IPR004827 GO:0003700|GO:0006355
Vvi3g403 72 SUPERFAMILY Leucine zipper domain 1 50 IPR046347 GO:0003700|GO:0006355
Vvi3g403 72 Gene3D - 1 57 - -
Vvi3g403 72 Coils Coil 15 53 - -
Vvi3g403 72 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 1 57 IPR004827 GO:0003700|GO:0006355
Vvi3g403 72 PANTHER ABSCISIC ACID-INSENSITIVE 5-LIKE PROTEIN 7 1 72 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g403 K14432 ABF; ABA responsive element binding factor - vvi:100243434 142.895
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g403 Vvi18g759 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g403 . . . . . . . . Cmo19g00618 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma19g00600 Car11g01097 Car19g00453 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005347 1 0 1 2 3 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14653 PF00170 bZIP_1 1.40E-11 CL0018 Vvi TF