Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g406 ATGAAAAACGTATCCAAGAAATTCTCATCATATGGCCTTGGAAACCAGAATGAAGAGATTGATTTCAATTTTTTATTTGACTCCAGCACCAAAACCCCCTTTGCAAAGTGCCTTCATGCCCTTCTTGTGGTGGCGGGGAAAGTTCAAAGCATTTTTATCTCAACCCGACTTGTCAATCTTTACGCTAACCTTGGTGATGTATCCTTGTCTCGCTGCACCTTTGATCAGATCCCACAAAAGGATGTCTATGCCTGGAACTCAATGATATCTGCCTATGTTCATAATGGCCATTTCCATGAAGCCATAGGCTGTTTCTATCAGCTGTTATTGGTGTCCGAAATTCGACCTGATTTTTACACTTTTCCTCCAGTGTTGAAAGCTTGCGGAACTCTAGTTGATGGGAGGAAGATTCATTGCTGGGCTTTCAAACTGGGTTTCCAATGGAATGTATTTGTGGCTGCTTCCTTGATCCATATGTATTCTCGGTTTGGTTTTACAGGTATTGCCCGTAGCTTGTTTGATGATATGCCGTTTCGAGATATGGGTTCTTGGAATGCCATGATTTCTGGGCTCATTCAAAATGGAAATGCTGCACAGGCATTGGATGTCTTAGATGAAATGAGATTGGAGGGAATAAAGATGAATTTTGTTACAGTTGTCAGCATTCTTCCTGTCTTTGTGGACATGTATGCAAAATTGGGTCTTCTAGATTCTGCACATAAAGTTTTTGAGATAATCCCAGTTAAAGATGTGATTTCATGGAACACTTTGATAACAGGTTATGCTCAAAATGGTCTTGCAAGTGAGGCAATTGAAGTATATAAAATGATGGAAGAGTGCAAGGAGATCATACCTAATCAAGGGACTTGGGTTAGCATTCTGCCAGCTTATGCGCATGTTGGAGCCTTGCAACAAGGAATGAAAATTCATGGGCGGGTGATTAAGACCAATCTCCACTTGGATGTTTTTGTGGCTACCTGCCTCATTGATGTGTATGGAAAATGTGGAAGATTGGTTGATGCAATGTCCTTGTTCTATCAAGTGCCCCAAGAGAGTTCTGTCACTTGGAATGCCATAATATCCTGTCATGGAATTCATGGACATGCTGAGAAAACTCTAAAGCTATTTGGAGAAATGCTAGATGAGGGGGTTAAGCCTGATCATGTTACATTTGTCTCGTTATTGTCAGCTTGTAGCCATTCGGGTTTTGTTGAGGAGGGTAAATGGTGCTTTCGTCTGATGCAGGAGTATGGAATTAAGCCTAGTTTGAAGCACTATGGGTGCATGGTAGACTTGCTTGGTCGAGCTGGTTATCTAGAAATGGCATATGATTTTATAAAGGACATGCCTTTACAGCCTGATGCTTCCATCTGGGGTGCCCTTCTTGGCGCTTGTAGAATACATGGGAATATTGAGTTGGGTAAATTCGCTTCAGATCGCTTATTTGAAGTTGATTCAAAAAATGTTGGATATTATGTTCTGTTGTCAAATATTTATGCTAATGTTGGGAAATGGGAGGGAGTTGATAAAGTGAGATCACTGGCTAGAGAGAGGGGATTGAAGAAAACTCCCGGTTGGAGCACAATTGAAGTGAACCGCAAGGTTGATGTCTTTTATACTGGGAACCAATCCCATCCGAAATGCAAGGAGATATATGAGGAGTTGCGAGTTTTGACTGCCAAAATGAAGAGCCTTGGTTATATTCCAGACTATAGCTTTGTGTTGCAGGATGTCGAGGAGGACGAAAAAGAGCATATCCTCACTAGTCATAGCGAGAGATTAGCTATTGCATTTGGAATCATTAGCACCCCTCCTAAAAGTCCTATCCGGATCTTCAAGAACTTGAGGGTTTGTGGGGATTGCCACAATGCAACTAAATTCATCTCAAGGATTACCCAGAGGGAGATTGTAGTGAGGGATTCTAATCGCTTCCATCACTTCAAGGATGGAATATGTTCTTGTGGAGACTACTGGTGA 1977 41.68 MKNVSKKFSSYGLGNQNEEIDFNFLFDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW* 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3900265 3903031 + Vvi3g406 Vvi3g406 784081

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g406 658 Pfam PPR repeat family 181 223 IPR002885 -
Vvi3g406 658 Pfam PPR repeat family 352 399 IPR002885 -
Vvi3g406 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Vvi3g406 658 Pfam E motif 468 530 IPR046848 -
Vvi3g406 658 Pfam PPR repeat 326 347 IPR002885 -
Vvi3g406 658 Pfam PPR repeat 84 107 IPR002885 -
Vvi3g406 658 Pfam PPR repeat 426 449 IPR002885 -
Vvi3g406 658 Pfam PPR repeat 252 280 IPR002885 -
Vvi3g406 658 Pfam PPR repeat 155 177 IPR002885 -
Vvi3g406 658 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 129 223 - -
Vvi3g406 658 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 7 147 - -
Vvi3g406 658 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 228 644 - -
Vvi3g406 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Vvi3g406 658 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 129 223 - -
Vvi3g406 658 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 228 644 - -
Vvi3g406 658 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 7 147 - -
Vvi3g406 658 Gene3D Tetratricopeptide repeat domain 34 133 IPR011990 GO:0005515
Vvi3g406 658 Gene3D Tetratricopeptide repeat domain 134 226 IPR011990 GO:0005515
Vvi3g406 658 Gene3D Tetratricopeptide repeat domain 227 308 IPR011990 GO:0005515
Vvi3g406 658 Gene3D Tetratricopeptide repeat domain 393 483 IPR011990 GO:0005515
Vvi3g406 658 TIGRFAM PPR: pentatricopeptide repeat domain 183 215 IPR002885 -
Vvi3g406 658 TIGRFAM PPR: pentatricopeptide repeat domain 252 286 IPR002885 -
Vvi3g406 658 TIGRFAM PPR: pentatricopeptide repeat domain 83 117 IPR002885 -
Vvi3g406 658 TIGRFAM PPR: pentatricopeptide repeat domain 389 422 IPR002885 -
Vvi3g406 658 TIGRFAM PPR: pentatricopeptide repeat domain 354 387 IPR002885 -
Vvi3g406 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Vvi3g406 658 Pfam DYW family of nucleic acid deaminases 566 658 IPR032867 GO:0008270
Vvi3g406 658 SUPERFAMILY TPR-like 61 506 IPR011990 GO:0005515
Vvi3g406 658 Gene3D Tetratricopeptide repeat domain 309 380 IPR011990 GO:0005515
Vvi3g406 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 280 IPR002885 -
Vvi3g406 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 116 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g406 - - - vvi:100854677 975.696
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g406 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010624 1 3 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 0 0 1 1 1 1 1 1 0 0 0 2 27