Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g408 ATGGCTTTGTTGCCCATTCAAAGGAATGTCACAAGAGCAGAGACGACTCAAGAGGGTTCATCGGTTTTGACACCGACCAAGAAGAAATGGTCCAATCTGATGCCTCTGTTCGTAGCCCTAGTTGTTGTTGCGGAGATCGCGTTCTTGGGTCGGCTTGACATAGCGAAGAACGTCGATGTAGTGAATTCGTGGACCGACTCGTTCTATTCAGCTCCGGCGTCGAAGGAATTGGCTGTGGGGGGTGATGATTTGGGATTGGATGGGTTGGAATCGGAGAGTTGTGAGGAGTGGTTGGAGAAAGAAGATGCAGTGGTATACTCTAGGGATTTTCGGAAGAACCCCATCTTGGTTTCCGGTGCTGAGCAGGAGTGGAAAACTTGTGCTGTGGGATGTAAGTTTGAATATAATTCCCATGGTAAGCTTGATGCTTCATTTGGTATACCTCAACCAGCTGGAACAGCTAGTGTCATTCGATCAATGGAATCAGCTCAGTACTATTCAGAGAACAAAATCGATCTGGCACGACGGAGGGGATATGATATTATAATGACAACCAGTCTCTCATCTGATGTTCCTGTTGGGTATTTTTCATGGGCTGAGTATGATATTATGGCACCAGTGCAACCAAAAACTGAAAGTGCCATTGCAGCTGCTTTCATTTCCAATTGTGGTGCTCGTAACTTCCGCTTACAAGCTCTTGAAGCACTTGAAAAAGCAAATGTCAAGATAGATTCCTACGGTGGTTGCCATCGGAACCGTGATGGAAGAGTGGACAAAGTACAAGCACTGAAGCACTACAAATTTAGCCTGGCTTTTGAGAATTCCAATGAGGAGGATTATGTTACTGAAAAATTCTTCCAGTCTCTTGTTGCTGGAAGTGTACCTGTGGTTATTGGCGCTCCGAATATTCAAGACTTTGCCCCTTCTCCTGGTTCTATTTTACATATTAAGGAGCTTAAAGATGCTGAACCGGTTGCAAAGACCATGAAATATCTTGCAGAACACCCTGAGGAATACAACCAATCATTAAGGTGGAAGTATGAGGGCCCATCTGATTCTTTCAAGGCCCTTGTAGATATGGCAGCGGTCCATTCTTCTTGCCGTCTTTGCATTCACCTGGCAACAGCAATTAGAGAGAAAGAAGAAAATAGCCCAGGTTTCCAGAAACGCCCTTGCAAGTGCACTAGAGGCTCAGAAACGGTGTATCATTTATACATAAGAGAAAGAGGGAGGTTTGAAATGGAATCCATTTTCTTGAGGTCTGGGAATTTGACTCTGGAGGCCCTGCAATCTGCGATTCTCAAGAAGTTCAAGTCTCTGAATCATGTACCCATTTGGAAAGAAGAAAGACCAGAAAGCATAAGAGGAGATAACGAACTTAAAGTATACAGAATATATCCTGTTGGGTTGACACAGAGGCAAGCTTTGTATACATTCAAATTTGAAGGGGATGCTGATCTTAGAAGTCATGTTGAAAGCAACCCATGTGCGAAGTTTGAAGTCATATTTGTCTAG 1515 44.03 MALLPIQRNVTRAETTQEGSSVLTPTKKKWSNLMPLFVALVVVAEIAFLGRLDIAKNVDVVNSWTDSFYSAPASKELAVGGDDLGLDGLESESCEEWLEKEDAVVYSRDFRKNPILVSGAEQEWKTCAVGCKFEYNSHGKLDASFGIPQPAGTASVIRSMESAQYYSENKIDLARRRGYDIIMTTSLSSDVPVGYFSWAEYDIMAPVQPKTESAIAAAFISNCGARNFRLQALEALEKANVKIDSYGGCHRNRDGRVDKVQALKHYKFSLAFENSNEEDYVTEKFFQSLVAGSVPVVIGAPNIQDFAPSPGSILHIKELKDAEPVAKTMKYLAEHPEEYNQSLRWKYEGPSDSFKALVDMAAVHSSCRLCIHLATAIREKEENSPGFQKRPCKCTRGSETVYHLYIRERGRFEMESIFLRSGNLTLEALQSAILKKFKSLNHVPIWKEERPESIRGDNELKVYRIYPVGLTQRQALYTFKFEGDADLRSHVESNPCAKFEVIFV* 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3918249 3929199 + Vvi3g408 Vvi3g408 784083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g408 504 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 101 379 - -
Vvi3g408 504 Gene3D - 160 353 IPR038577 -
Vvi3g408 504 PANTHER FUCOSYLTRANSFERASE-LIKE PROTEIN-RELATED 30 481 - -
Vvi3g408 504 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 30 481 IPR001503 GO:0006486|GO:0008417|GO:0016020
Vvi3g408 504 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 214 378 IPR001503 GO:0006486|GO:0008417|GO:0016020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g408 K00753 - vvi:100255469 999.579