Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g408 ATGGCTTTGTTGCCCATTCAAAGGAATGTCACAAGAGCAGAGACGACTCAAGAGGGTTCATCGGTTTTGACACCGACCAAGAAGAAATGGTCCAATCTGATGCCTCTGTTCGTAGCCCTAGTTGTTGTTGCGGAGATCGCGTTCTTGGGTCGGCTTGACATAGCGAAGAACGTCGATGTAGTGAATTCGTGGACCGACTCGTTCTATTCAGCTCCGGCGTCGAAGGAATTGGCTGTGGGGGGTGATGATTTGGGATTGGATGGGTTGGAATCGGAGAGTTGTGAGGAGTGGTTGGAGAAAGAAGATGCAGTGGTATACTCTAGGGATTTTCGGAAGAACCCCATCTTGGTTTCCGGTGCTGAGCAGGAGTGGAAAACTTGTGCTGTGGGATGTAAGTTTGAATATAATTCCCATGGTAAGCTTGATGCTTCATTTGGTATACCTCAACCAGCTGGAACAGCTAGTGTCATTCGATCAATGGAATCAGCTCAGTACTATTCAGAGAACAAAATCGATCTGGCACGACGGAGGGGATATGATATTATAATGACAACCAGTCTCTCATCTGATGTTCCTGTTGGGTATTTTTCATGGGCTGAGTATGATATTATGGCACCAGTGCAACCAAAAACTGAAAGTGCCATTGCAGCTGCTTTCATTTCCAATTGTGGTGCTCGTAACTTCCGCTTACAAGCTCTTGAAGCACTTGAAAAAGCAAATGTCAAGATAGATTCCTACGGTGGTTGCCATCGGAACCGTGATGGAAGAGTGGACAAAGTACAAGCACTGAAGCACTACAAATTTAGCCTGGCTTTTGAGAATTCCAATGAGGAGGATTATGTTACTGAAAAATTCTTCCAGTCTCTTGTTGCTGGAAGTGTACCTGTGGTTATTGGCGCTCCGAATATTCAAGACTTTGCCCCTTCTCCTGGTTCTATTTTACATATTAAGGAGCTTAAAGATGCTGAACCGGTTGCAAAGACCATGAAATATCTTGCAGAACACCCTGAGGAATACAACCAATCATTAAGGTGGAAGTATGAGGGCCCATCTGATTCTTTCAAGGCCCTTGTAGATATGGCAGCGGTCCATTCTTCTTGCCGTCTTTGCATTCACCTGGCAACAGCAATTAGAGAGAAAGAAGAAAATAGCCCAGGTTTCCAGAAACGCCCTTGCAAGTGCACTAGAGGCTCAGAAACGGTGTATCATTTATACATAAGAGAAAGAGGGAGGTTTGAAATGGAATCCATTTTCTTGAGGTCTGGGAATTTGACTCTGGAGGCCCTGCAATCTGCGATTCTCAAGAAGTTCAAGTCTCTGAATCATGTACCCATTTGGAAAGAAGAAAGACCAGAAAGCATAAGAGGAGATAACGAACTTAAAGTATACAGAATATATCCTGTTGGGTTGACACAGAGGCAAGCTTTGTATACATTCAAATTTGAAGGGGATGCTGATCTTAGAAGTCATGTTGAAAGCAACCCATGTGCGAAGTTTGAAGTCATATTTGTCTAG 1515 44.03 MALLPIQRNVTRAETTQEGSSVLTPTKKKWSNLMPLFVALVVVAEIAFLGRLDIAKNVDVVNSWTDSFYSAPASKELAVGGDDLGLDGLESESCEEWLEKEDAVVYSRDFRKNPILVSGAEQEWKTCAVGCKFEYNSHGKLDASFGIPQPAGTASVIRSMESAQYYSENKIDLARRRGYDIIMTTSLSSDVPVGYFSWAEYDIMAPVQPKTESAIAAAFISNCGARNFRLQALEALEKANVKIDSYGGCHRNRDGRVDKVQALKHYKFSLAFENSNEEDYVTEKFFQSLVAGSVPVVIGAPNIQDFAPSPGSILHIKELKDAEPVAKTMKYLAEHPEEYNQSLRWKYEGPSDSFKALVDMAAVHSSCRLCIHLATAIREKEENSPGFQKRPCKCTRGSETVYHLYIRERGRFEMESIFLRSGNLTLEALQSAILKKFKSLNHVPIWKEERPESIRGDNELKVYRIYPVGLTQRQALYTFKFEGDADLRSHVESNPCAKFEVIFV* 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3918249 3929199 + Vvi3g408 Vvi3g408 784083

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g408 504 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 101 379 - -
Vvi3g408 504 Gene3D - 160 353 IPR038577 -
Vvi3g408 504 PANTHER FUCOSYLTRANSFERASE-LIKE PROTEIN-RELATED 30 481 - -
Vvi3g408 504 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 30 481 IPR001503 GO:0006486|GO:0008417|GO:0016020
Vvi3g408 504 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 214 378 IPR001503 GO:0006486|GO:0008417|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g408 K00753 E2.4.1.214; glycoprotein 3-alpha-L-fucosyltransferase [EC:2.4.1.214] - vvi:100255469 999.579
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g408 Blo02g00831 Blo15g00748 Bda06g01072 Bda08g00885 . . Bma05g00514 . Cmo19g00620 . . . . . . . Cpe15g00486 Bhi05g01063 . . . . . . Cla02g00602 Cam02g0631 Cec02g0631 Cco02g0650 Clacu02g0635 Cmu02g0631 Cre02g0955 . . Cone3ag1179 Cone10ag0987 . Csa07g00757 . Cme01g00052 . . . . . . . . . . . . Cma19g00602 . Car19g00455 Cpe14g00294 Cpe01g00439 . . . . . . . . . . . . . . . . Chy01g00056 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi17g575 ECH 82 516 Xyloglucan Fucosyltransferase1 AT1G14100 52.4 2.8e-138 489.2
Vvi1g967 ECH 72 475 Xyloglucan Fucosyltransferase1 AT1G14110 52.2 6.6e-126 448.0
Vvi17g575 ECH 91 518 Xyloglucan Fucosyltransferase1 AT1G14110 50.9 1.2e-114 410.6
Vvi3g408 . 27 505 Xyloglucan Fucosyltransferase1 AT1G49710 69.9 3.5e-197 684.9
Vvi18g1437 . 1 400 Xyloglucan Fucosyltransferase1 AT1G71990 71.5 3.4e-171 598.2
Vvi17g575 ECH 21 515 Xyloglucan Fucosyltransferase1 AT2G03210 51.0 1.2e-150 530.4
Vvi17g575 ECH 35 513 Xyloglucan Fucosyltransferase1 AT2G03220 56.7 8.3e-168 587.4
Vvi1g967 ECH 8 468 Xyloglucan Fucosyltransferase1 AT2G03220 54.2 1.2e-166 583.6
Vvi3g408 . 20 505 Xyloglucan Fucosyltransferase1 AT3G19280 68.3 2.7e-194 675.2
Vvi17g575 ECH 21 515 Xyloglucan Fucosyltransferase1 AT2G03210 51.0 1.2e-150 530.4
Vvi17g575 ECH 35 513 Xyloglucan Fucosyltransferase1 AT2G03220 56.7 8.3e-168 587.4
Vvi1g967 ECH 8 468 Xyloglucan Fucosyltransferase1 AT2G03220 54.2 1.2e-166 583.6
Vvi17g575 ECH 21 515 Xyloglucan Fucosyltransferase1 AT2G03210 51.0 1.2e-150 530.4
Vvi17g575 ECH 82 516 Xyloglucan Fucosyltransferase1 AT1G14100 52.4 2.8e-138 489.2
Vvi1g967 ECH 72 475 Xyloglucan Fucosyltransferase1 AT1G14110 52.2 6.6e-126 448.0
Vvi17g575 ECH 91 518 Xyloglucan Fucosyltransferase1 AT1G14110 50.9 1.2e-114 410.6
Vvi3g408 . 20 505 Xyloglucan Fucosyltransferase1 AT3G19280 68.3 2.7e-194 675.2
Vvi3g408 . 27 505 Xyloglucan Fucosyltransferase1 AT1G49710 69.9 3.5e-197 684.9
Vvi18g1437 . 1 400 Xyloglucan Fucosyltransferase1 AT1G71990 71.5 3.4e-171 598.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001699 7 4 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 4 1 70