Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g409 ATGTCTTTTGAAGAAATTGAAAAGTCTAAGCATACTAAGGATGATATTGATGTGAGGCTCAAGTGGCTTGGACTGTTTCATAGGAGGAAGCATCAATATGGTAGATTTATGATGAGATTGAAGCTGCCAAATGGGGTGACATCAAGTGCACAAACTCGTTACCTGGCCAGTGCAATAAGGCAATACGGGAAGGAGGGATGTGCCGATGTGACTACGCGGCAAAACTGGCAAATTCGAGGTGTGGTACTGCCTGATGTGCCTGAAATACTAAAGGGTCTTTCAGAGGTTGGTTTGACGAGCCTGCAGAGTGGCATGGACAATGTGAGGAATCCTGTTGGAAATCCTCTTGCAGGCATTGACCCTCATGAGATTGTTGATACACGACCTTACACCAACTTGTTATCCCAATTCATTACTGCCAATGCTCGTGGGAATACAGCCTTCACTAACTTGCCGAGGAAGTGGAATGTGTGTGTTGTAGGCTCCCATGATCTCTATGAGCATCCCCACATCAATGATCTGGCGTACATGCCTGCCACAAAGAAAGGAAGATTTGGATTCAATCTGCTAGTAGGCGGGTTCTTTAGTCCCAAACGTTGTGCTGATGCTATTCCTCTCGATGCCTGGATCCCTGCCGACGATGTCCTCCCAGTTTGTCAAGCAGTACTAGAGGCTTACAGGGATCTTGGTACCAGAGGAAACCGCCAAAAGACAAGAATGATGTGGTTAATTGATGAGCTGGGCATAGAGCAGTTCCGGGCAGAGGTGGTGAAAAGAATGCCCCAACAAGAGCTGGAAAGATCATCTTCTGAAGACCTGGTTCAGAAGCAATGGGAGAGGAGAGATTACCTTGGTGTCCATCCCCAGAAACAGGAAGGCTTTAGCTTTGTGGGTATTCACATTCCAGTGGGTCGAGTCCAGGCAGATGACATGGACGAGCTAGCTCGATTGGCAGACGAATATGGCTCAGGCGAGCTCCGGCTCACTGTAGAGCAGAACATCATAATTCCCAATGTGGAGAACTCAAGACTTGAAGCCTTGCTCAAAGAGCCTCTCTTGAGAGACAGATTCTCTCCGGAGCCTCCTATTCTCATGAAAGGCTTGGTGGCCTGCACCGGCAATCAGTTTTGTGGACAGGCCATTATCGAGACCAAGGCCAGAGCATTGAAGGTGACGGAGGATGTGGGGCGGCTGGTTTCAGTGACCCAGCCAGTGAGGATGCACTGGACCGGCTGCCCAAACTCCTGCGGCCAGGTGCAAGTGGCGGATATCGGATTCATGGGGTGCATGACAAGGGACGAGAATGGGAACGTTTGTGAAGGGGCAGATGTATTCTTAGGAGGTAGAATTGGGAGCGACTGTCATTTGGGAGAGGTTTATAAGAAGCGTGTTCCTTGCAAAGACTTAGTGCCCTTGGTTGCTGAAATTTTGGTAAATCACTTTGGAGGAGATTTTAATCCATGCTCATATACAACTCCTATACAATTAAACATGATGTGA 1500 48.27 MSFEEIEKSKHTKDDIDVRLKWLGLFHRRKHQYGRFMMRLKLPNGVTSSAQTRYLASAIRQYGKEGCADVTTRQNWQIRGVVLPDVPEILKGLSEVGLTSLQSGMDNVRNPVGNPLAGIDPHEIVDTRPYTNLLSQFITANARGNTAFTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATKKGRFGFNLLVGGFFSPKRCADAIPLDAWIPADDVLPVCQAVLEAYRDLGTRGNRQKTRMMWLIDELGIEQFRAEVVKRMPQQELERSSSEDLVQKQWERRDYLGVHPQKQEGFSFVGIHIPVGRVQADDMDELARLADEYGSGELRLTVEQNIIIPNVENSRLEALLKEPLLRDRFSPEPPILMKGLVACTGNQFCGQAIIETKARALKVTEDVGRLVSVTQPVRMHWTGCPNSCGQVQVADIGFMGCMTRDENGNVCEGADVFLGGRIGSDCHLGEVYKKRVPCKDLVPLVAEILVNHFGGDFNPCSYTTPIQLNMM* 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3930216 3943910 + Vvi3g409 Vvi3g409 784084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g409 499 Gene3D - 2 354 - -
Vvi3g409 499 PANTHER FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC 3 482 - -
Vvi3g409 499 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 105 262 IPR045854 -
Vvi3g409 499 ProSitePatterns Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 410 426 IPR006066 GO:0016491|GO:0020037|GO:0051536
Vvi3g409 499 Gene3D Sulfite Reductase Hemoprotein, domain 1 362 484 IPR045854 -
Vvi3g409 499 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 366 477 IPR045854 -
Vvi3g409 499 Pfam Nitrite and sulphite reductase 4Fe-4S domain 105 262 IPR006067 GO:0016491|GO:0020037|GO:0051536
Vvi3g409 499 Pfam Nitrite and sulphite reductase 4Fe-4S domain 369 477 IPR006067 GO:0016491|GO:0020037|GO:0051536
Vvi3g409 499 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 4 104 IPR036136 GO:0016491
Vvi3g409 499 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 30 95 IPR005117 GO:0016491
Vvi3g409 499 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 287 350 IPR005117 GO:0016491
Vvi3g409 499 PRINTS Sirohaem Fe-binding site signature 366 384 IPR006066 GO:0016491|GO:0020037|GO:0051536
Vvi3g409 499 PRINTS Sirohaem Fe-binding site signature 410 428 IPR006066 GO:0016491|GO:0020037|GO:0051536
Vvi3g409 499 PANTHER FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC 3 482 - -
Vvi3g409 499 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 241 377 IPR036136 GO:0016491
Vvi3g409 499 Gene3D Sulfite Reductase Hemoprotein, domain 1 97 282 IPR045854 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g409 K00366 nirA; ferredoxin-nitrite reductase [EC:1.7.7.1] - vvi:100253671 962.214
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g409 . Blo15g00744 Bda06g01068 . Bpe07g00380 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1177 Cone10ag0984 . . . . . . . . . . . . . . . . . . . Cpe14g00297 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011811 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30