Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g42 ATGAGGTCTTCGAAGAAATTCAATGAGATTCGATGCGTCAGTGGCTTTAAACCGGTTCTTGGTCGCAGGGATCTGTTTGGAAGCGTTATTCAGACGAGGCGTTTTCTGGGTTGTGGAGACGGAGAAGAGGGCGGTGTTCTGTCGAAAGTGTATGAGGAGAAGCGCGTTTTAGGGTACTCTCCAGAACAGTTATTTGATGTTGTTGCAGCAGTTGACTTGTATCACGGTTTTGTGCCCTGGTGTCAGCGATCAGAGATAATTAAACACAATCCAGATGGATCATTTGATGCGGAGCTTGAGATTGGTTTTAAATTTCTTGTTGAAAGTTATGTTTCTCATGTGGAGTTAAACAGACCAAAGACTATAAAGACAACTGTCTCAGAAAGTTCCCTTTTTGACCATTTGATAAATATATGGGAATTCAATCCGGGACCAATTCCAGGAACTTGCGACATTCATTTCTTAGTGGATTTTAAGTTCCAATCCCCACTTTATCGACAGGTGGCATCCGTGTTCTTCAAGGAGGTGGTCTCTCGACTGGTTGGTTCATTCAGTGACCGCTGCCGTTTGATTTATGGACCAGGAGTGCCAGTACTTGAAAACCCCAATGAGCAAAGGCTATGA 624 43.75 MRSSKKFNEIRCVSGFKPVLGRRDLFGSVIQTRRFLGCGDGEEGGVLSKVYEEKRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEIIKHNPDGSFDAELEIGFKFLVESYVSHVELNRPKTIKTTVSESSLFDHLINIWEFNPGPIPGTCDIHFLVDFKFQSPLYRQVASVFFKEVVSRLVGSFSDRCRLIYGPGVPVLENPNEQRL* 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 579356 583313 - Vvi3g42 Vvi3g42 783717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g42 207 PANTHER SPERM PROTEIN HOMOLOG 23 201 IPR044996 GO:0006744|GO:0045333|GO:0048039
Vvi3g42 207 CDD COQ10p_like 51 189 IPR044996 GO:0006744|GO:0045333|GO:0048039
Vvi3g42 207 Gene3D - 49 193 IPR023393 -
Vvi3g42 207 SUPERFAMILY Bet v1-like 51 193 - -
Vvi3g42 207 Pfam Polyketide cyclase / dehydrase and lipid transport 58 184 IPR005031 -
Vvi3g42 207 PANTHER POLYKETIDE CYCLASE / DEHYDRASE AND LIPID TRANSPORT PROTEIN-RELATED 23 201 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g42 K18588 COQ10; coenzyme Q-binding protein COQ10 - vvi:100267514 426.787
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g42 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .