Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g421 ATGCCATCCCTGCACCCAGAGTTTTTTTCTGACTGGCCTTGGTGTTTTTTGGTAGGTGTCCTTTTAAACTGTGGCTCAACCAAAGATATAGTCACAACGAACCTGAAATTTATTACCGATGAAGGCTTCATTTCCGTTGGCAACTCATCAACCCTTAAAACACCAGATTTGTTTCCAATACTGTCTACATTGAGGTATTTTCCGGACAAGTCGGCTAAGAAGTACTGCTACGTGATTCCGGTGATCAAAGGAGGGAAGTATCTGATAAGAACTACCTACTATTATGGAGGGTTTGATGGAGGGAATGAGCCACCGGTTTTTGAGCAGATCATTGATGGAACCAAGTGGGGCATTGTCAACACGACCGAGGATTATGCAAAGGGGCTCACCTCATACTACGAGATTGTCGTGGCTGCCATGGGGAAGACGCTCAGCGTTTGCCTTGCCAGGAATGGGAAGACGGTTTCGAGTCCATTTATTACAGCTCTGGAGCTGGAGAATATGGAGGCCTCTGTGTATAATTCCACTGATTTTACCAAGTATGCGCTGAACGTTGTTGCTAGACACAGTTTTGGCTCCAACGATGATATCGTTTGCTTTCCAGATGATCCATACAACCGGTTCTGGCAACCATTCATGGATAATAATCCCATTGTTGAGAGCCATTCCAATATAACTTCTTCAGATTTCTGGAACACGCCACCACTAAAGGTGTTTAAGTCAGCAATCACAACAAGCAGAGGAAAAACACTTCAACTCCAGTGGCCTACTGAACCTCTTCCTAGTAGCAAATACTACATTTCACTCTACTTCCAAGATAATCGGACACCAAGCCCATTTAGTTGGAGAGTTTTCAGTGTTTCTGTTAATGGCAAGAACTTTTTCACTAATCTCAATGTTACAACTGATGGTGTGATGGTGTATGGGACACAATGGCCTCTCTCTGGGCTGACTGAGATTGTCATGACTCCTGGGGCTGACATACCCGTTGGGCCTGTGATCAATGCTGGGGAGATCTTTCAGATGCTGCCTCTAGGTGGAAGGACTCTCACTAGGGATGTCATGGGAATGGAAGATTTGGCAAGAGGGTTTAACAACCCTCCTTCAGATTGGAGTGGAGATCCATGCCTGCCTCAAAACAACTCATGGACTGGAGTTACATGTACAACAGGAAAACTCGCTCGAGTTGTTACTTTGAATCTAACAAACTTCGATTTGGCCGGGTCACTATCACCAAGCATAGCCAATTTGACTGGACTTACGCATCTTTGGCTTGGGGGGAACAAACTCTCGGGTCCTATCCCAGAAATGAGCACATTGAATGAGCTACAAACTTTACATTTGGAGGACAATGGCTTTGAAGGATCGTTCCCTCGATCATTAGACCAGGTTACAAGCCTTCAAGAGATTTACGTTCAAAACAACAATCTAAATGGTACTATTCCAGGGACACTACAAAAGAGACTGGGCATAAACCTCAACATTTATATCTGCGGACTCCAAATCAGAGAGAAACTAGCAGTTGAAAGTGTGAATCAACTGTGGGCGTTTTCGATCATCTGA 1563 44.53 MPSLHPEFFSDWPWCFLVGVLLNCGSTKDIVTTNLKFITDEGFISVGNSSTLKTPDLFPILSTLRYFPDKSAKKYCYVIPVIKGGKYLIRTTYYYGGFDGGNEPPVFEQIIDGTKWGIVNTTEDYAKGLTSYYEIVVAAMGKTLSVCLARNGKTVSSPFITALELENMEASVYNSTDFTKYALNVVARHSFGSNDDIVCFPDDPYNRFWQPFMDNNPIVESHSNITSSDFWNTPPLKVFKSAITTSRGKTLQLQWPTEPLPSSKYYISLYFQDNRTPSPFSWRVFSVSVNGKNFFTNLNVTTDGVMVYGTQWPLSGLTEIVMTPGADIPVGPVINAGEIFQMLPLGGRTLTRDVMGMEDLARGFNNPPSDWSGDPCLPQNNSWTGVTCTTGKLARVVTLNLTNFDLAGSLSPSIANLTGLTHLWLGGNKLSGPIPEMSTLNELQTLHLEDNGFEGSFPRSLDQVTSLQEIYVQNNNLNGTIPGTLQKRLGINLNIYICGLQIREKLAVESVNQLWAFSII* 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4041064 4046927 + Vvi3g421 Vvi3g421 784096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g421 520 PANTHER OS07G0107800 PROTEIN-RELATED 19 494 - -
Vvi3g421 520 Pfam Malectin-like domain 22 342 IPR024788 -
Vvi3g421 520 Gene3D - 177 321 - -
Vvi3g421 520 SUPERFAMILY L domain-like 376 487 - -
Vvi3g421 520 Gene3D Ribonuclease Inhibitor 357 507 IPR032675 -
Vvi3g421 520 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-KINASE-RELATED 19 494 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g421 - - - vvi:100248596 980.319
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g421 . . . . . . . . Cmo19g00625 . . . . . Sed05g2434 . Cpe15g00491 Bhi05g01125 Tan02g0904 Cmetu01g2340 . Hepe02g0582 . . Cla02g00596 Cam02g0625 Cec02g0625 Cco02g0640 Clacu02g0629 Cmu02g0625 Cre02g0949 Cone12ag1096 . . . . Csa07g00765 . Cme01g00044 Blo04g00489 . . Bda14g00519 . . Bma03g00519 . . . . . Cma19g00607 . Car19g00461 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009605 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 3 1 33