Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g427 ATGTGCCTATTTAATACTCATTTACAAATAAATTATTTTAGACTAGTTTTAATTCAATATGTAGAGGAAGAGGAGGAGAACGACGACGAAGAACGATCGGCGGTCAAATCACCAACGTCCGATGAAGGTAGGAAATCGCAGAATGTCGACGCTCTCTTGAGAGGTAACCTTGTTTTAAGAAGACAATCGTTACTTCCACGAGTTCTTTCAGTGACAGATGGGGCAGCTGTTGCTAGAAAACCCTTTAAACCCCCATTCTCTAATGGCTACCATGATCGGAATGACCAGTTAGTTCATCGTCTTTGGGCTCGCAAACGGTTTGTTCCTTGGGGCTCCTCAAGGCCAGCTTTGGTTTTGATAACCAACCGTGTGAATATATCTAGTGCTGCTGAGAAAGATGTGTTGGAGGAAAGTGTGAGTCTGCCAGCAGGGATCGACCCTTTGGTGTTGTGGCACCCTGAGGAATCTGAAGAGCAGGCAGATAATTTGATGCCAATAGTGGTGGACCCATTGCTTGTCCGTTTCCTTCGACCTCATCAGAGAGAGGGGGTTCAGTTCATGTTTGATTGTGTTTCAGGGTTATCTAGCACTGCTAATATTTCTGGGTGCATTTTGGCTGATGATATGGGCCTGGGCAAAACTTTGCAATCAATCACATTGTTGTATACTCTTCTTCGTCAGGGATTTGATGGGAAAGCAATGGTTAAAAAGGCAATAATCGTTACTCCTACTAGTCTTGTAAGTAACTGGGAGGCTGAAATTAAGAAGTGGGTTGGAGAAAGAGTTCAACTTGTTGCTCTCTGTGAAAGTACCCGAGATGATGTTGTATTTGGAATTGATAGTTTTACAAGTCCCCATAGCCCTTTACAGGTTCTGATTGTTTCATATGAGACATTTCGCATGCATTCTTCAAAATTTAGTCACAGTGGATCCTGTGACCTTCTCATATGTGATGAGGCTCACAGACTGAAAAATGACCAGACATTAACAAATCGGGCATTGGCTGCTCTGGCATGCAAGCGTCGCGTTTTATTGTCAGGCACTCCAATGCAGAATGACCTAGAAGAGTTCTTTGCTATGGTTAACTTTACTAATCCAGGAATCTTGGGTGATGCTACATATTTCCGTCGTTACTATGAGACACCAATCATTTGTGGAAGAGAACCTACTGCAGCTGAAGAAGAGAAGAAATTAGGTGCGGAACGATCTGCAGAACTGAGTTCAACAGTGAACCAGTTCATATTGAGGAGGACTAATGCATTATTATCAAATCACCTCCCACCAAAGATAGTTGAAGTTGTTTGTTGCAGGTTATCTCCTCTCCAATCAGAATTGTATAACCATTTTATACATTCTAAAAATGTTAAAAAGGTAATTAATGAAGAAATGAAGCAGTCAAAGATTTTGGCTTATATCACCGCTCTTAAGAAGCTTTGCAATCATCCAAAGGTTTTTGGAATAAGAGAACTCAAAAACCAGATGCACATCTTAAAGGTATGGAGGGTTATCAACCTAGTCTTGATGAAAGTGATGACAATTTTAATTTCAATGATGATTGATGATGATGCCCAAAACTTCTCTAGGATGTTAGAAAATATGGTATTAATCTTAAACATCATTTTGTGGTCCAAAGGCATCCATGGACTACACGATAAGGTATTCCTGCAGGTCCTTCCCCATACCTTAAATTCCCCAACCCTGATAAAGGTGGTATATAATCCCAGATCTCTGGTGCAATCACCTAGAAACTCAATTGACCTTCTTAAAAACCTTGTGGTCCAATTGGGTACACTTCTTTTTATTTTCTTTTGGGGGGAGAAATTACTAAATGCAAAAGGCCATGGTAATATGACTAAAGAGATGCTTGAGTACCGTGAAGTTTCTTATAGTTACTCCATACAGAGAAATAGAGAACAAAGCAATTTAGTAGTATCCATATTTACAAAAAATTTTGTTATCTATACAATTGGAAACACTATGTATAGCATTTCACCAGATCTTCTCATTTATGATACTGTAAAAAGTGGAAACCAGGGAACATCAGGTTTTGAAGACTGTATGCGCTTTTTCCCTCCAGAAATGTTCTCTGGAAGATCTGGAGCATGGACCGGTGGTGAAGGGATTTGGGTTGAACTGTCTGGGAAAATGCATGTCTTAGCCCGATTGCTGGCCCATCTGCGTCAGAAAACAGATGACCGAATTGTCCTTGTCTCAAACTATACTCAGACATTAGACCTTTTTGCTCAATTGTGTCGAGAGAGAAGATATCCGTACTTGAGACTTGATGGCACCACATCAATCAACAAAAGACAGAAGTTGGTAAACCGTTTCAGTGACCCATTGAAGGATGAGTTTGTGTTTCTCTTGAGCAGCAAGGCTGGTGGTTGTGGCCTCAATTTGATTGGTGGAAACCGACTAGTCTTGTTTGATCCTGATTGGAATCCTGCCAATGATAAACAAGCTGCTGCAAGAGTCTGGAGGGATGGACAAAAGAAGAGAGTATACATCTATAGATTTTTAAGTACTGGGACGATCGAAGAAAAGGTATTCCAGCGTCAAATGTCAAAAGAAGGGCTTCAAAAAGTAATTCAGCAGGAGCAAAAAGACAGCCTTAAGACACAGGGTAACTTTCTTTCAACAGAAGATTTACGTGATCTCTTCTCATTTCATGAGAATGTGAGGTCTGAAATTCACGAAAAGATGAATTGCAACCGTTGTCAAAATTATGATGAAAGACCTGAGAGCGTGAGAGAGGAGGATGGTTTTGAATCAAAAAATGAAGGTTGTCAGTCTTATCAAATGGATTGTGATGATATAGGTGGATTTGCAGGCATTACTGGATGCTTGCATAAGTTAAAAAGATCTGAGAAACAGGTGGGGACTGCTTTGGAAGAGGATTTAGGAAGTTGGGGGCATCATTTTTTCTCAACATCAGTGCCTGATGCTATCTTTCAAGCTTCAGCGGGTGATGAGGTCACGTTTGTTTTCACAAACCAAGTAGATGGGAAGCTTGTACCTGTTGAATCAAAAGTACGGGCAAATATGCAGGGAGTTGAAGCAAATAAGAACCAATCTGACAAAAGGGGAAAACTGCTCCAAAAACCCACGTTACTGTCTAAACATCAACAGTCAGCCCCACCAGTTTCTAACAAAGGAGATTCTATCACCAGCATATCATCATCCTCTTCCAAGCCTTTTCATCTGGCAGGTATAAAATCAATGAGAACATCAAAAGGCACACCATCTGTAACATTAAAGCCCAAACTCTCTATTGGAAGTCAATTACCCCTGAAAAGATTGTCTCCTGATTCTGTACAACATGATGATGACTTTGAGTGA 3339 40.55 MCLFNTHLQINYFRLVLIQYVEEEEENDDEERSAVKSPTSDEGRKSQNVDALLRGNLVLRRQSLLPRVLSVTDGAAVARKPFKPPFSNGYHDRNDQLVHRLWARKRFVPWGSSRPALVLITNRVNISSAAEKDVLEESVSLPAGIDPLVLWHPEESEEQADNLMPIVVDPLLVRFLRPHQREGVQFMFDCVSGLSSTANISGCILADDMGLGKTLQSITLLYTLLRQGFDGKAMVKKAIIVTPTSLVSNWEAEIKKWVGERVQLVALCESTRDDVVFGIDSFTSPHSPLQVLIVSYETFRMHSSKFSHSGSCDLLICDEAHRLKNDQTLTNRALAALACKRRVLLSGTPMQNDLEEFFAMVNFTNPGILGDATYFRRYYETPIICGREPTAAEEEKKLGAERSAELSSTVNQFILRRTNALLSNHLPPKIVEVVCCRLSPLQSELYNHFIHSKNVKKVINEEMKQSKILAYITALKKLCNHPKVFGIRELKNQMHILKVWRVINLVLMKVMTILISMMIDDDAQNFSRMLENMVLILNIILWSKGIHGLHDKVFLQVLPHTLNSPTLIKVVYNPRSLVQSPRNSIDLLKNLVVQLGTLLFIFFWGEKLLNAKGHGNMTKEMLEYREVSYSYSIQRNREQSNLVVSIFTKNFVIYTIGNTMYSISPDLLIYDTVKSGNQGTSGFEDCMRFFPPEMFSGRSGAWTGGEGIWVELSGKMHVLARLLAHLRQKTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSINKRQKLVNRFSDPLKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKVFQRQMSKEGLQKVIQQEQKDSLKTQGNFLSTEDLRDLFSFHENVRSEIHEKMNCNRCQNYDERPESVREEDGFESKNEGCQSYQMDCDDIGGFAGITGCLHKLKRSEKQVGTALEEDLGSWGHHFFSTSVPDAIFQASAGDEVTFVFTNQVDGKLVPVESKVRANMQGVEANKNQSDKRGKLLQKPTLLSKHQQSAPPVSNKGDSITSISSSSSKPFHLAGIKSMRTSKGTPSVTLKPKLSIGSQLPLKRLSPDSVQHDDDFE* 1113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4075993 4091628 + Vvi3g427 Vvi3g427 784102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g427 1112 CDD SF2_C_SNF 712 840 - -
Vvi3g427 1112 MobiDBLite consensus disorder prediction 1037 1112 - -
Vvi3g427 1112 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 718 875 IPR001650 -
Vvi3g427 1112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 421 913 IPR027417 -
Vvi3g427 1112 Pfam Helicase conserved C-terminal domain 720 828 IPR001650 -
Vvi3g427 1112 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 34 488 - -
Vvi3g427 1112 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 708 1025 - -
Vvi3g427 1112 Gene3D - 439 520 - -
Vvi3g427 1112 MobiDBLite consensus disorder prediction 1037 1067 - -
Vvi3g427 1112 Gene3D - 149 416 IPR038718 -
Vvi3g427 1112 SMART ultradead3 172 379 IPR014001 -
Vvi3g427 1112 MobiDBLite consensus disorder prediction 1075 1089 - -
Vvi3g427 1112 Pfam SNF2-related domain 179 484 IPR000330 GO:0005524|GO:0140658
Vvi3g427 1112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 417 IPR027417 -
Vvi3g427 1112 CDD DEXHc_RAD54 176 417 - -
Vvi3g427 1112 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 194 367 IPR014001 -
Vvi3g427 1112 MobiDBLite consensus disorder prediction 27 46 - -
Vvi3g427 1112 PANTHER SNF2/RAD54 FAMILY MEMBER 708 1025 - -
Vvi3g427 1112 PANTHER SNF2/RAD54 FAMILY MEMBER 34 488 - -
Vvi3g427 1112 Gene3D - 705 919 IPR027417 -
Vvi3g427 1112 SMART helicmild6 745 829 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g427 K10875 RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] - vvi:100246859 915.99
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g427 Blo02g00835 . . . . . Bma05g00518 . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1099 . . . . . . . . . . . . . . . . . . . . . . . Cpe01g00442 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009997 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14655 PF00176 SNF2_N 1.60E-54 CL0023 Vvi TR