Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g429 ATGTTTCCGTGGAACTTCGCCAAATCGGCGGAGGAGATGTTCTCCCAGTGGGCAATCAAGCGCGTCTGCAAATTCTTGTTGAAGAAGAAATTGGGGCAGTTCATATTGGGGGACGTCGATCTCGACCAGCTCGACGTGCAGCTCAGCGCCGGCACAATTCAGCTTTCCGATGTCGCGCTCAATGTCGATTATCTTAACCAGAAGTTAGGTGCAGCAGCAGCTGTTGTTGTAAAAGAAGGATCAATTGGCTCTCTCTCAGTTAAAATGCCTTGGAAGGTTAATGGTTGTCAGATTGATGTAGATGAACTTGAGCTTGTTCTTGGCCCATGTGTGGAGAATAATTCTACAAGTGGAGATGAAACTTCTGTTCACAATCAAGTTGGTAACCATGACATCAGCCAAGACTTTCGAAAGTTTGAGAATGAGATGGTGGATAATGCTGCAACTTCTGCTTCTTTGGATGTCCATGAAGGTGTTAAGACAATTGCCAAGATGGTGAAATGGTTGCTAACAAGCTTCCATGTGAAGGTAAGAAAACTTATTGTTGCCTTTGATCCATGTTCGGAGAAGAATGAAAAGAAGACAGGGTTTCAAAAAGCCTTGGTTCTTAGAATCGATGAAACAGAATGTGGGACATGCGTTTCTGAAGATGATAATTCGAATGGCGATGCAAGGGTTGAGAGCTTTCTTGGAATAAGTCGACTAACAAACTTCATAAAATTTCAAGGAGCAATAATTGAACTTCTTCAAATTGATGATGTTGACCATCAAACATCATTTCCATGTACTTCAGGAAGCTTCAGTGAACTGCTTTCTGGGTTTTGTCCATCAAATGCTACAACTCCAATCCTGACAGGGGAAGGAGGTGGATTTTCAGGGACTGTAAAATTAAGTATGCCTTGGAAGAATGGTTCATTAGACATCCACAAAGTAGATGCGGATGTTTATATTGATCCCATAGAATTGAGATTTCAACCAAGCACAATTAACTGGTTCTTACTTTTATGGGAATCTCTTAAGAGTTTGGGTAGGGATGGGCTGGATGGCAAAGAGTGTATCCATCACAAGACAACTGAATCTGTGATACCAACTTGTGAGAGTTTTGCTGCAGACTTCTGTTCTACAACGGGGCAAGAATCGGTGACAGATATTCTGCTACCGCATCTTATATCAGATTGGGTGCCATTTTCTGTCAATGACCAGAAAGAAGAGGAGGTAGCTTTTGGGGAAAGTGTAGACCAGTTTTTTGAATGTTTTGATGGAGTGAGAAGTTACCAATCAGCTCTAGGAAACAGCGGGATATTGAACTGGACTTGTTCTGTTTTCAGTGCAATAACTGCAGCATCCAGTCTTGCATCTGGATCTTTGCATGTCCCCACCGAACAGCAGCATGTTGAAACTAATCTTAAGGCAACTATTGCTGGAATTTCTGTTGTGTTTGCCTTCCATGATGAAAATCAGAGGCATTCATGTGATCTGGGTGGTGCTCAGGCAAATGTTGGTTTGAATGTTCATTATCTTGGTGCAGAATGCAGAGACATGCTTTTTATCTTGCAGGTATCTCCTCAAAATATGAAGTTTGAAGTGACAGTGAAACATATTGAACTTGCTGATTACTTTAGGGATGAAAAGGATGTTATGGATTTTGCATTGCGCGGTTATAATAACACAACTCTTTTGGTGCAACATCTGCAAGCTGAAGTTCAAGGTGCCCTTCCTCCATTTGCCTTGTCAGCTGAAGATCCTGATATAGAAATACATAGATCTGGTTCTGCAAGTTTTAATGAGAATGATGTGGTCAAGGTTATTTTGCTTAGAACTTCAGGTGTCAGTCATTGCCTATCTACTGTAAATTCTAGTTCTGTAAATGGCAGTTTGGCAGGGACAACATCATTTTCATTGAAGCTGCCACCAATTGTTTTCTGGGTGAACTTTCAGACAATAAATGCATTATTGGATCTTTCAAAGGAATTTGAAAATTCCCTTGAAATGAATTGCAATAGAAGTTCTGGATCTTGTGATACTACCTTGTCTTCAAGAAAGAGTTTGCGAGGAAATATATTCCTGCCCAATGCAAGAGTAATTTTATGCTTTCCTTTTGAGACTGATGAAAATTCTGGATGCTACTCTTCCTGGGATCAATTTTTGGTTCTTGATTTATCTTTACCATCATCTTTGGATAAAGGAATAATTCAAGACACTTGTACAATTCCAAATGCAGACTCTCAGAATGGGTTTTCCTCAAGAGCCTCACGATCCTTGCATTTGAATGTTGGTAACCTTGACATTTACTTGGTCACTTCTTCCTGTGAAGATGGCTGTGAGATTAATTCCCGTGATGTGCAGAGGCATGGATTTTCTGCTCATAGAATTCTATCTGCTACTAACAGAACAAGCAGTTTTTCAGTCATTAGCATGCTTTGGCAGGAGAGGCCTGTGACTGGTCCTTGGATAGCAAAGAAAGCCAAGTTGTTAGTTACTTCAGAGGATTCAAGGACCAGAAATAAATTCGTGGGAAAAGGTTATGAGTTTGCTTCTGTGACTACTGTGAAAGATCTGGGAGATTTAAATTCTTGCACACGACAAGAGATGATTCTGAGTTCTGCGTTTTTCCTCCATCTCCGTCTATCACCTATTACTGTCAATCTGAGCAGTTCTCAGTACAATGATTTGCATCATCTTATAAATCAAGTGACAAATGGATTATCACGTGCAGCCTGTGATCCAGTCAGTGTTAGTGAAGAATCTTCTGTCACACAGATGTCAATCCTTGTGGAATGTGATTCAGTGGAAATTTTAATTAATCTGGATAGAGTGGAGAGTATCAAAGGTTCATTGCAGAGTGAACTACCTGGTTCATGGCATAGTCTAAAACTGAAAATTCAGAAGTTTGAGTTGCTATCTGTCTCAAATATTGGAGGAATTAAGGGTGCCAAATTTCTTTGGTTTGCCCATGGTGAAGGAAAATTATGGGGTTCTATCACGAGTGCTCCAGAGCAAGAGCTTCTTTTGATCTTGTGTAGCAACTCTACAATGAAACGTGGTGATGGAGAAGGTTTAAATAAATTATCATCTAGATTAGCTGGTTCTGATATAATACACCTCTGGGATCCAGAGAGTGTCCACAGTTATGCATCCATAACCGTCAGATGCAGCACAGTTATTGCAGTAGGTGGGCGCTTGGATTGGTTGGAGGCGATATCCTCTTTTTTCAGTTTGCCCTCTGCTGAAACTGAACAACCAGGTTACAACAGTTCCCAAAATGGGGATTTAAGTTCATCCTTTGGTTCTTCATTTTATCTTAACCTGGTGGATATTGGTTTGAGTTATGAGCCTTACTTTAAGCATTTGCTGGGCATGTGTGAACGGTATGTTGCTTGTATGTTAGCTGCATCTTCCTTGAATCTTTCTAACACAACAATGGCAGATTCCACTGATAATGAATACAAGATTAGAATACAAGATCTGGGCCTTCTTGTATGTGCGGTGTCAGAGCCTGAGAATGTTGGTGGCATTTATAGTTCAGAACGTCTTCACAAAGTTGGCTATGTCAAGGTTGCTGGGGAGGCACTTTTTGAAGCAATTTTGAGAACTAACTGCAGGAATGACCTTCTCTGGGAGTTAGAATGTTCTGAATCTCATATTCACCTGGATACTTGCCATGACACCACTTCTGGTCTCATCTGTTTGGTTTCTCAGATCCAACGGCTTTTTGCTCCTGACGTGGAGGAATCGATTATCCACTTGCAGACAAGGTGGAACAATGTTCAGCAGGCACAAGAAAGGAATGATTCCAGTGATGAAACCATGATCTTCAACAGTGATTCTGCTCCACCAGCCGCTCAAGTGCATACTTCGAGTGATGATGAGAAGACTGAACATGGGGTGTTTGCTTTGATGGATGAAATATGTGAAGATGCATTTAACTTAGGTGGACATGCAGCCTCCCAATTGGGTTCTTGTGAATCACAAATTCATATATCACTTGATGGAAGTTTTCTTGGAGAGGCGTGTAACCTTAACATTAGAACCCCTGAATTTTTCTCTCGTAATCTATCCTTCAATGGGACAGTTCCTGTAATAGGACTGGATAGTCATCAATCGTCAGTTCCACAAAATGGTGGCTTTCCCGAATTCATAGAAAGTTATTACATGTCGGAGTCAAGCCATCTGTCAGAAATATCTGCAGCCAAGGAATCTTCGCATGAGATTCTGGAATTTAAATCCAGAAATATGGGAAATGAAGATCTTGAAAGAGGAAACAGTGGATGGTATGGGGATGCCTCATTAAGAATTGTTGAAAACCATATTCCAGAAATGAGCGAGCAGGCTGGCTTGAGACAGTCTGTAAAAGGCAAGCTTCCTTCTACTGACCATAGAAGACCTGATGATCTAGGAAAGGCCAGAGGACGTGTACTCCTTAAAAATGTTAATGTCAGATGGAAAATGTTTGCTGGTTCTGACTGGAATCACCCTGGAAAGACTGGCCAGCCTTCTGCAAATATTAGTGGAAGGGATGCAGCCACATGCCTGGAGCTTGCACTATCTGGGATGGACTTTCAGTATGACATTTTTCCAGATGGAGAAATATTTGTATCTAAGCTTTCTCTCTTTATTAAGGATTTTCATCTTTATGATAACAGCAGAGATGCACCATGGAAACTGGTTCTGGGTTATTATCATTCAAAAGATCATCCTAGAGAGTCCTCTTCAAAAGCATTCAAGTTGGACTTAGAAGCTGTCAGACCAGACCCTTCAACTCCTCTTGAGGAGTATAGGTTACGGATTGCTGTTCTTCCTATTCTATTGCATCTTCATCAGGGACAACTTGATTTTCTTGTTAGCTTTTTCGGGGGAAAAAATCAGTCAGTTGACCAGTCTCCAAGTCATTGCCATGCTTCAGATGGGACAAAATTATCATCAACAAAGAATAGCAATTTTGCAAGGCATGCTATTTCAGAGGAGGCATTGCTTCCTTATTTTCAGAAGTTTGATATATGGCCTATTCTTGTGCGGGTTGACTACAGTCCCTGTCGTGTTGATCTAGCTGCGTTAAGAGCCGGGAAGTATGTAGAGCTTGTTAATCTTGTTCCCTGGAAGGGGGTTGAACTTAATCTCAAACACGTCCACGCTGTTGGTGTGTATGGATGGAGCAGTGTATGTGAAACAATTATAGGGGAATGGTTGGAAGATATTTCTCAAAATCAGATTCATAAATTGTTGCAAGGTCTTCCAACATTTCGATCATTGGTTGCTGTTAGTTCTGGTGCTGCAAAGTTTGTTTCTTTGCCTGTTAAGAACTACAAGAAGGACCGCAGACTAATCAAGGGAATGCAACGAGGCACAATTGCATTTCTTAGAAGTATTTCACTGGAAGCTGTTGGACTGGGGGTACATTTGGCAGCAGGAGCTCATGAAATCTTACTCCAAGCAGAATATATTCTTTCAAATATTCCATCTTCTGTACCATGGCCTGTAGAAAATAGAATAAATTCAAATATAAGAACTAATCAACCTAAAGATGCACAACAAGGAATCCAGCAGGCTTATGAAAGTCTCAGTGATGGTCTTGGGAGATCTGCTTCTGCTTTAGTTCAAACTCCCTTGAAAAAATATCAGCGTGGAGCTGGTGCAGGATCTGCTTTGGCAACTGCTGTTCAAGCAGCTCCGGCCGCTGCAATAGCTCCTGCTTCTGGTCTAGCCCGTGCAGTACATTGTGCTCTTCTTGGAGTCAGAAATAGCCTCGATCCCGAGCATAAAAAAGAGTCCATGGAGAAATATATGGGTCCTGCTGGAGTCAGAAATAGCCTTGATCCTGAGCATAAAAAAGAGTCCATGGAGAAATATTTGGGTCCTGCTGGAGTCAGAAATAGCCTTGATCCCGAGCGTAAAAAAGAGTCCATGGAGAAATATTTGGGTCCTGCTGGAGTCAGAAATAGCCTTGATCCCGAGCATAAAAGAGAGTCCATGGAGAAAAATTTGGGTCCTGCTGAGCCTCAGGAACAGATTTAA 6012 41.37 MFPWNFAKSAEEMFSQWAIKRVCKFLLKKKLGQFILGDVDLDQLDVQLSAGTIQLSDVALNVDYLNQKLGAAAAVVVKEGSIGSLSVKMPWKVNGCQIDVDELELVLGPCVENNSTSGDETSVHNQVGNHDISQDFRKFENEMVDNAATSASLDVHEGVKTIAKMVKWLLTSFHVKVRKLIVAFDPCSEKNEKKTGFQKALVLRIDETECGTCVSEDDNSNGDARVESFLGISRLTNFIKFQGAIIELLQIDDVDHQTSFPCTSGSFSELLSGFCPSNATTPILTGEGGGFSGTVKLSMPWKNGSLDIHKVDADVYIDPIELRFQPSTINWFLLLWESLKSLGRDGLDGKECIHHKTTESVIPTCESFAADFCSTTGQESVTDILLPHLISDWVPFSVNDQKEEEVAFGESVDQFFECFDGVRSYQSALGNSGILNWTCSVFSAITAASSLASGSLHVPTEQQHVETNLKATIAGISVVFAFHDENQRHSCDLGGAQANVGLNVHYLGAECRDMLFILQVSPQNMKFEVTVKHIELADYFRDEKDVMDFALRGYNNTTLLVQHLQAEVQGALPPFALSAEDPDIEIHRSGSASFNENDVVKVILLRTSGVSHCLSTVNSSSVNGSLAGTTSFSLKLPPIVFWVNFQTINALLDLSKEFENSLEMNCNRSSGSCDTTLSSRKSLRGNIFLPNARVILCFPFETDENSGCYSSWDQFLVLDLSLPSSLDKGIIQDTCTIPNADSQNGFSSRASRSLHLNVGNLDIYLVTSSCEDGCEINSRDVQRHGFSAHRILSATNRTSSFSVISMLWQERPVTGPWIAKKAKLLVTSEDSRTRNKFVGKGYEFASVTTVKDLGDLNSCTRQEMILSSAFFLHLRLSPITVNLSSSQYNDLHHLINQVTNGLSRAACDPVSVSEESSVTQMSILVECDSVEILINLDRVESIKGSLQSELPGSWHSLKLKIQKFELLSVSNIGGIKGAKFLWFAHGEGKLWGSITSAPEQELLLILCSNSTMKRGDGEGLNKLSSRLAGSDIIHLWDPESVHSYASITVRCSTVIAVGGRLDWLEAISSFFSLPSAETEQPGYNSSQNGDLSSSFGSSFYLNLVDIGLSYEPYFKHLLGMCERYVACMLAASSLNLSNTTMADSTDNEYKIRIQDLGLLVCAVSEPENVGGIYSSERLHKVGYVKVAGEALFEAILRTNCRNDLLWELECSESHIHLDTCHDTTSGLICLVSQIQRLFAPDVEESIIHLQTRWNNVQQAQERNDSSDETMIFNSDSAPPAAQVHTSSDDEKTEHGVFALMDEICEDAFNLGGHAASQLGSCESQIHISLDGSFLGEACNLNIRTPEFFSRNLSFNGTVPVIGLDSHQSSVPQNGGFPEFIESYYMSESSHLSEISAAKESSHEILEFKSRNMGNEDLERGNSGWYGDASLRIVENHIPEMSEQAGLRQSVKGKLPSTDHRRPDDLGKARGRVLLKNVNVRWKMFAGSDWNHPGKTGQPSANISGRDAATCLELALSGMDFQYDIFPDGEIFVSKLSLFIKDFHLYDNSRDAPWKLVLGYYHSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIAVLPILLHLHQGQLDFLVSFFGGKNQSVDQSPSHCHASDGTKLSSTKNSNFARHAISEEALLPYFQKFDIWPILVRVDYSPCRVDLAALRAGKYVELVNLVPWKGVELNLKHVHAVGVYGWSSVCETIIGEWLEDISQNQIHKLLQGLPTFRSLVAVSSGAAKFVSLPVKNYKKDRRLIKGMQRGTIAFLRSISLEAVGLGVHLAAGAHEILLQAEYILSNIPSSVPWPVENRINSNIRTNQPKDAQQGIQQAYESLSDGLGRSASALVQTPLKKYQRGAGAGSALATAVQAAPAAAIAPASGLARAVHCALLGVRNSLDPEHKKESMEKYMGPAGVRNSLDPEHKKESMEKYLGPAGVRNSLDPERKKESMEKYLGPAGVRNSLDPEHKRESMEKNLGPAEPQEQI* 2004
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4095877 4121942 - Vvi3g429 Vvi3g429 784104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g429 2003 MobiDBLite consensus disorder prediction 1258 1291 - -
Vvi3g429 2003 Pfam N-terminal region of Chorein or VPS13 20 117 IPR026854 -
Vvi3g429 2003 MobiDBLite consensus disorder prediction 1258 1285 - -
Vvi3g429 2003 PANTHER AUTOPHAGY-RELATED 2, ISOFORM A 13 1927 IPR026849 GO:0006914
Vvi3g429 2003 MobiDBLite consensus disorder prediction 1919 2003 - -
Vvi3g429 2003 PANTHER AUTOPHAGY-RELATED 2, ISOFORM A 13 1927 IPR026886 GO:0006914|GO:0030242
Vvi3g429 2003 MobiDBLite consensus disorder prediction 1453 1467 - -
Vvi3g429 2003 Pfam Autophagy-related protein C terminal domain 1834 1927 IPR015412 -
Vvi3g429 2003 MobiDBLite consensus disorder prediction 1980 1994 - -
Vvi3g429 2003 MobiDBLite consensus disorder prediction 1443 1467 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g429 K17906 ATG2; autophagy-related protein 2 - vvi:100257340 3921.7
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g429 . Blo15g00739 Bda06g01058 . Bpe07g00391 . . Bma12g00463 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe01g00444 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008445 2 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35