Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g430 ATGGAGCTCAAACCAGGTCTATCAGCTCTGGTCACCGGTGGAGCCTCTGGAATTGGTAAAGCTATTAGCTTAGCTTTGGGAGAGAAGGGAATATTTGTTACAGTGGTTGACTTCTCTGAAGAAAGGGGAAAGGAAGTCGCATCCCTTGTTGAAAAAGAGAATGCCAAATTCCACCCGAAGTTGGGATTTCCATCTGCTATGTTCATAAGATGTGATGTGACTAATACAAGAGAATTGGCTGCTGCTTTCAAGAAGCATTTAGCAACATATGGAGGGTTAGACATCTGTGTAAACAGTGCGGGAATTGGTACCCATGAACCATTCCATAAGGATCAAACTGAGAACTCTGGTTTGTGGAGACGAACCATTAATGTGAACCTGGTAGCAGTTATCGACTGCACTCGCCTGGCGATTCAAACCATGCAAGCTGCGAAAAAGCCTGGTGTAATTATTAATATGGGATCTGCTTCAGGTCTTTATCCGATGTATGTTGACCCTATCTACTCTGCCTCCAAAGGTGGTGTGGTTCTATTTACCAGATCACTTGCACCTTATAAACGCCACGGAATTCGTGTCAATGTGCTTTGCCCTGAGTTTGTTCAAACTGAGATGGGCTCAAGCGTGGATTCTAAATTTATTGGTTTAATGGGTGGTTATGTGTCAATGGAAATGGTGGTGAAAGGTGCTTTTGAGCTTATAAGTGATGAGAGGAAAGCTGGATCATGTTTATGGATCACAAACAGGAGAGGAATGGAGTATTGGCCAACTCCCATTGAAGAAGCAAAATACAGGTTGCCTATTTCAAAATCAAGGAGAAAAGTCCCATTCAAAGCTTCATTGAATCTCCAAATTCCTCAGAGTTTTGAGAAAGTAGTTGTCCACACCTTGAGTCACAATTTCCGTAGTGCAACCAGCATAGTGCGTGTGCCATTGAGATTACCAATCAAACCACGCCATGTCCTTGTGAAAATAATTTATGCCGGTGTTAATGCTAGTGATGTGAACTTTAGCTCAGGCCGTTATTTTGGTGGAAATGACAAAGACCTTGGCTCGCGTCTTCCATTTGATGCTGGTTTTGAGGCTGTGGGAATAATTGCTGCTGTGGGTGATTCTGTCAATGATTTGAAAATTGGCACTCCTGCTGCAGTTATGATTTTTGGAAGTTATGCTGAATTTATGATGGTTCCTTCCAAGCACATCCTTCCCGTGGCAAGACCAGATCCAGAAGTTGTTGCGATGCTAACCTCAGGACTTACAGCATCAATTGCTTTAGAAAAGGCAGTACAAATGGAATCTGGAAAAGTAGTTCTTGTCACTGCTGCTGCTGGAGGAACTGGACAGTTCGCAGTCCAGCTTGCAAAATTAGCTGGAAATACAGTCATTGCAACTTGTGGAGGTAAGGAAAAAGCTATGCTGTTGAGAGATTTAGGAGTTGATCGAGTGATAGACTACAAAGCAGAAGATATAAAAACTGTTCTAAAAAAGGAATTTCCCAAAGGTGTTGATATTATCTATGAGTCTGTTGGTGGCGAAATGTTTAATCTTTGCTTGAATGCATTGGCAACATATGGACGACTCGTTGTGATCGGAATGATTTCTCAGTATCAAGGGGCTCGTGGATGGCAGCCTTCAAATTATACTGGGCTATGTGAGAAACTTCTAGCAAAAAGCCAAACTGTGGCTGGCTTTTTCCTGGTGCAATATGCTCACTTATGGCAAGAACATTTGGACAGGCTTTTTCATCTTTTCTCCTTGGGAAAGCTTAAGGTTGCTGTAGACCCAAAAAGATTTCTTGGCCTCCATGCTGTTGCAGATGCTGTCGAATATCTTCATTCGGGTAAAAGTGCTGGTAAGGTTATCGTTTGCATTGATCCAGCCTACAGTCAACAAACAGCAAAATTATGA 1905 42.47 MELKPGLSALVTGGASGIGKAISLALGEKGIFVTVVDFSEERGKEVASLVEKENAKFHPKLGFPSAMFIRCDVTNTRELAAAFKKHLATYGGLDICVNSAGIGTHEPFHKDQTENSGLWRRTINVNLVAVIDCTRLAIQTMQAAKKPGVIINMGSASGLYPMYVDPIYSASKGGVVLFTRSLAPYKRHGIRVNVLCPEFVQTEMGSSVDSKFIGLMGGYVSMEMVVKGAFELISDERKAGSCLWITNRRGMEYWPTPIEEAKYRLPISKSRRKVPFKASLNLQIPQSFEKVVVHTLSHNFRSATSIVRVPLRLPIKPRHVLVKIIYAGVNASDVNFSSGRYFGGNDKDLGSRLPFDAGFEAVGIIAAVGDSVNDLKIGTPAAVMIFGSYAEFMMVPSKHILPVARPDPEVVAMLTSGLTASIALEKAVQMESGKVVLVTAAAGGTGQFAVQLAKLAGNTVIATCGGKEKAMLLRDLGVDRVIDYKAEDIKTVLKKEFPKGVDIIYESVGGEMFNLCLNALATYGRLVVIGMISQYQGARGWQPSNYTGLCEKLLAKSQTVAGFFLVQYAHLWQEHLDRLFHLFSLGKLKVAVDPKRFLGLHAVADAVEYLHSGKSAGKVIVCIDPAYSQQTAKL* 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4130581 4162043 + Vvi3g430 Vvi3g430 784105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g430 634 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 93 634 - -
Vvi3g430 634 PANTHER BNAA08G02470D PROTEIN 93 634 - -
Vvi3g430 634 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 155 183 IPR020904 GO:0016491
Vvi3g430 634 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 256 IPR036291 -
Vvi3g430 634 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Vvi3g430 634 PRINTS Glucose/ribitol dehydrogenase family signature 91 102 IPR002347 -
Vvi3g430 634 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Vvi3g430 634 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Vvi3g430 634 PRINTS Glucose/ribitol dehydrogenase family signature 188 205 IPR002347 -
Vvi3g430 634 Gene3D - 412 590 - -
Vvi3g430 634 Pfam short chain dehydrogenase 9 209 IPR002347 -
Vvi3g430 634 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 IPR002347 -
Vvi3g430 634 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Vvi3g430 634 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
Vvi3g430 634 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 433 454 IPR002364 GO:0008270|GO:0016491
Vvi3g430 634 CDD ADH_SDR_c_like 9 254 - -
Vvi3g430 634 SUPERFAMILY GroES-like 298 437 IPR011032 -
Vvi3g430 634 Pfam Zinc-binding dehydrogenase 444 578 IPR013149 -
Vvi3g430 634 SMART PKS_ER_names_mod 298 621 IPR020843 GO:0016491
Vvi3g430 634 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 409 587 IPR036291 -
Vvi3g430 634 Gene3D - 293 621 - -
Vvi3g430 634 Pfam Alcohol dehydrogenase GroES-like domain 318 384 IPR013154 -
Vvi3g430 634 CDD Mgc45594_like 287 622 - -
Vvi3g430 634 Gene3D - 6 247 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g430 - - - vvi:100258817 1251.88
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g430 . Blo15g00737 Bda06g01055 . Bpe07g00392 . . Bma12g00464 . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1101 Cone8ag1142 . . . . . . . . . . . . . . . . . . . . . Cpe14g00299 Cpe01g00449 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007124 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37