Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g431 ATGGGGGTCTCGGAGGTATCATACGAGGAAAGCCGTCGAAAAAGACTAGAAGAAAACAAGAAGAGGATGGAAGAACTTAATCTTCATAAGCTTTCTGAGTCTCTTCGAACTGCCAGAAGCCCTAAGTCCTCACCGGTAAAGAAGGTCAAGCCGCGCACACCTCGGTCGCCGGTGGACTTGTCTGCGGTGAGAAGATCGAGTCGGTTTGTGGATAAGCCTTCTCCTAATTACAAGGAAGTGCCCATTGAGCCTTTGGAGAGGTCTAAAAGGTTATCCTATCAACGGAGGGATTTGTTGAATCGGGTCTATGCTTCTGATGAAGCTAGGGTGTATGCTGTAGAAAGAGCAGAAGAACTGCAATCAGGTTTAGAAACTGATTTTCCAAGCTTTGTGAAGCCAATGCTCCAATCTCATGTGACTGGTGGGTTCTGGCTGGGTCTTCCTGTCCATTTCTGCAAGATGCATCTTCCAAAACATGATGAAATGATTAGTTTGGTGGATGAAGATGGAAATGAATCCCCAGTCAAATACCTTGCTGAGAAAACCGGACTTAGTGGAGGATGGAGAGGCTTCGCTATTGACCATGAATTAGTTGATGGGGATGCATTGGTTTTCCAACTAATCAAGCCTACAAAATTTCAGGTGCTTGGACTTAAATTTGTACCTATTTGA 672 44.94 MGVSEVSYEESRRKRLEENKKRMEELNLHKLSESLRTARSPKSSPVKKVKPRTPRSPVDLSAVRRSSRFVDKPSPNYKEVPIEPLERSKRLSYQRRDLLNRVYASDEARVYAVERAEELQSGLETDFPSFVKPMLQSHVTGGFWLGLPVHFCKMHLPKHDEMISLVDEDGNESPVKYLAEKTGLSGGWRGFAIDHELVDGDALVFQLIKPTKFQVLGLKFVPI* 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4170183 4173696 - Vvi3g431 Vvi3g431 784106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g431 223 ProSiteProfiles B3 DNA-binding domain profile. 130 221 IPR003340 GO:0003677
Vvi3g431 223 MobiDBLite consensus disorder prediction 7 36 - -
Vvi3g431 223 Gene3D - 105 219 IPR015300 -
Vvi3g431 223 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS06G0194400 6 215 - -
Vvi3g431 223 SUPERFAMILY DNA-binding pseudobarrel domain 124 216 IPR015300 -
Vvi3g431 223 SMART B3_2 130 222 IPR003340 GO:0003677
Vvi3g431 223 MobiDBLite consensus disorder prediction 1 63 - -
Vvi3g431 223 Coils Coil 6 33 - -
Vvi3g431 223 Pfam B3 DNA binding domain 130 213 IPR003340 GO:0003677
Vvi3g431 223 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 6 215 IPR044837 -
Vvi3g431 223 CDD B3_DNA 128 219 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g431 Vvi7g1082 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14656 PF02362 B3 5.10E-15 CL0405 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g431 - - vvi:100262457 402.134