Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g432 ATGTCTAGTTGCAAGAGAATAAGGGTCGACACAGATCATATCACCAATGGTAATGAGGCAAAATCTTCTGTCATGGAGAGAGCAGAGAAGGTTCAAAGGAATCTGCCTTCTGAAATCCCTAGCATGATTAAGTCTATGCTACCATCACATGTTACAGGCGGTTTTTGGCTGGGTCTTCCTAAGAAATTCTGCGATGTGCATTTGCCAAAGTATGATACTACAATTATTTTGGTGGATAAAAGGGGGGCTGAATATAAGACAAAGTTTCTTGTGGGAAAGACAGGATTGAGTGGTGGATGGAGAGGATTTTCAATTGCTCATAATTTACTTGAAGGGGATGTTTTGGTTTTTGGTCTGGTCCAACCTACCAAATTCATGGTATACATTGTGAGAACAAATGGTTTTGATGAATTCTATATTCCTCAAGAGAATACTAAGAAGGAGAGCCTATCAGTATCAACTACTGAACTTGGCCTTGCAGCATGTCAGTCAGAAAATGACAGTGATGGGCATGGTTCAGAAGTCTTGGAGAGGATTAGATTCTCAGAATCTGCTGTTGATTTTAAAGAAGTGAAAAGTATGGAAGCTTTCTCCATTCTTGTGAATGGTTTGATCATAAACTCTGAGTTTTCCAAACACCTCCAGACCAAGTACTATGAACTCTGCTGCAGTCAGAAAACTTATCTTCATGATCATCTTCTAGATGGCCTCAACTATAAGCTGGCTGCTGGAATCATTTCAGAGACTGTAAACATTGCTGATGCCATTAGAGCTAGCAAGCTCACCACCTCTAGAGATAATTTTTCTATTTGGAGCAAGACCCTAAAAGCCTTCCAGGAGTTGGGGATGAATGTCGGCTTCTTACGAGCTCGGTTAGACCAACTTATGAGCTTTGGCTTTGTAGAAAACAGGAAGAGAGAAGCTAGGCTTGAAAGAGTTAGTGCAGAAGAGAAGATAAGAGATCTAGAAGGGAGTCTTCTGCATGTCAAAGAAGTGAGAAAGAGGCTTAATGCTGAAATTGAGGCTCTGGATTCGCCTGCTGCAGAGAAGCATGAGATGATGTTCCAGGAACTAGCTAAATCCTCATGGTGA 1092 41.21 MSSCKRIRVDTDHITNGNEAKSSVMERAEKVQRNLPSEIPSMIKSMLPSHVTGGFWLGLPKKFCDVHLPKYDTTIILVDKRGAEYKTKFLVGKTGLSGGWRGFSIAHNLLEGDVLVFGLVQPTKFMVYIVRTNGFDEFYIPQENTKKESLSVSTTELGLAACQSENDSDGHGSEVLERIRFSESAVDFKEVKSMEAFSILVNGLIINSEFSKHLQTKYYELCCSQKTYLHDHLLDGLNYKLAAGIISETVNIADAIRASKLTTSRDNFSIWSKTLKAFQELGMNVGFLRARLDQLMSFGFVENRKREARLERVSAEEKIRDLEGSLLHVKEVRKRLNAEIEALDSPAAEKHEMMFQELAKSSW* 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4176728 4178437 - Vvi3g432 Vvi3g432 784107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g432 363 Pfam B3 DNA binding domain 43 132 IPR003340 GO:0003677
Vvi3g432 363 SMART B3_2 42 133 IPR003340 GO:0003677
Vvi3g432 363 CDD B3_DNA 40 131 IPR003340 GO:0003677
Vvi3g432 363 Coils Coil 305 325 - -
Vvi3g432 363 Gene3D - 18 135 IPR015300 -
Vvi3g432 363 MobiDBLite consensus disorder prediction 1 23 - -
Vvi3g432 363 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100 13 294 - -
Vvi3g432 363 SUPERFAMILY DNA-binding pseudobarrel domain 37 136 IPR015300 -
Vvi3g432 363 ProSiteProfiles B3 DNA-binding domain profile. 42 133 IPR003340 GO:0003677
Vvi3g432 363 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 13 294 IPR044837 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g432 - - - vvi:100267610 672.544
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g432 Vvi7g1082 ECH
Vvi3g432 Vvi18g781 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g432 . . . . . . . . . Cmo11g01356 . . . . . Cpe04g00274 . . . . . . . . Cla02g00594 . . . . . . . . Cone3ag1105 . . . . Cme01g00041 . . . . . . . . . . . . . . . . Cpe01g00450 . . . . . . . . . . . . . . . . Chy01g00047 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012618 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 5 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14657 PF02362 B3 2.60E-14 CL0405 Vvi TF