Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g434 ATGTGGCGCGATGGAGGCAAGCTCTACTGGGCCAGAAAGGAGGAGGCTGTCAAGGTTGAAGGAGTTGTCGTGATCTTCGCTTGGGCTTCGATTCAGGAGACCCACTTGAAGGAGTTTGTGGATCTCTACTCTTCTCTTGGATGGAATTCTCTTGTTTGTCACGCCGGTTTTCTCAACGCTTTCTTTCCTGAGAAGGCCACCTCGCTAGCATTTGTTGCTCTCAAGGAGCTTGTTGAGGAGCTGAGGATTAGACCATGTCCTATAGTCTTTGCAGCCTTTTCTGGTGGTCCAAAAGCTTGCATGTACAAGGTTTTTCAGATTATTGAAGGATCATGCGAAGCACACCTTCATGTGGATGATAGTCGATTGGTCAGAAATTGCATTTCTGGATACATCTATGATTCTAGTCCAGTAGATTTTACAAGTGATTTTGGTGCTCGATTTGGTCTGCCCCCCACCATTCTCAAAATGCCTGGTTCAACAAAACTAGTATCTTGGGTGGCAAAAGGTGTTGCTTCTGGTCTGGATGCTCTATATCTCACTAGGTTTGAGTTCCAACGTACTGAGTACTGGAGGACACTATACTCTTCGGTCGGTTTGGGAGCTCCTTTTCTCATTTTATGCTCCAAACATGATGATCTTGCTCCATATCAGATTGTTTGCAATTTTTCTCACCGTTTACAAGATCTTGGGGCTGATGTTAAACTTTTGAAATGGAATAACTCCCTTCATGCAGGTCATTACAGGCAATATCCAACTGAATACAAGGCTGCTGTGACTGAGCTCCTCAAGAAGGCAGCTTCAGTGCATCTCCAAAAAATCCAACTTGAAGGAGAAAGAGCAGGCATGGAGGGTGCACAGGATGAGATATCTGAGTTGATATGCAACCTCCAGAAAGCAGCAGTGAACTCAAACCAGAGCCTAAGAAGAGTTGCAATCGAGCCGAGTGACCACTTCTTCTTGCCAAGTTCAGCAGAGTATCAAAATGGTAGAGACTCTGGACCCTCACCTGATGAGCTGAAAGAAAGATCAGTCCCTGTGCCTGACCCCCCACGCATCAGTGCACATAGTGTTCTTGGGCAGTTCCTCTTTGATGTTTGTGTCCCTAAAAACATTGAAGGTTGGGATATTAAATTTTCTGGCTCTTTGAATGGGCAGCCGCTTGCTTCTGCTCGTAGGTATTCTCAGTATGTAAGCAAATGCACTCGTCGCTCAAGATTGTAG 1224 45.51 MWRDGGKLYWARKEEAVKVEGVVVIFAWASIQETHLKEFVDLYSSLGWNSLVCHAGFLNAFFPEKATSLAFVALKELVEELRIRPCPIVFAAFSGGPKACMYKVFQIIEGSCEAHLHVDDSRLVRNCISGYIYDSSPVDFTSDFGARFGLPPTILKMPGSTKLVSWVAKGVASGLDALYLTRFEFQRTEYWRTLYSSVGLGAPFLILCSKHDDLAPYQIVCNFSHRLQDLGADVKLLKWNNSLHAGHYRQYPTEYKAAVTELLKKAASVHLQKIQLEGERAGMEGAQDEISELICNLQKAAVNSNQSLRRVAIEPSDHFFLPSSAEYQNGRDSGPSPDELKERSVPVPDPPRISAHSVLGQFLFDVCVPKNIEGWDIKFSGSLNGQPLASARRYSQYVSKCTRRSRL* 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4192398 4198551 - Vvi3g434 Vvi3g434 784109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g434 407 PANTHER DUF829 DOMAIN PROTEIN 1 342 - -
Vvi3g434 407 PANTHER UNCHARACTERIZED 1 342 IPR008547 -
Vvi3g434 407 Coils Coil 283 303 - -
Vvi3g434 407 SUPERFAMILY alpha/beta-Hydrolases 128 265 IPR029058 -
Vvi3g434 407 MobiDBLite consensus disorder prediction 323 349 - -
Vvi3g434 407 Pfam Eukaryotic protein of unknown function (DUF829) 128 375 IPR008547 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g434 - - - vvi:100245307 826.239
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g434 Vvi18g783 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g434 Blo02g00836 Blo15g00736 Bda06g01054 Bda08g00853 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1106 . . . . . . . . . . . . . . . . . . . . Cpe14g00300 Cpe01g00451 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004102 6 1 2 0 0 0 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 6 1 44