Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g435 ATGTTATTAAAACTAGTTAACAAAGAGAGGGCGAGTTGTTCAGAAATGAAGGAGTACATGAGCGAATGTGAGACAATTGTAGGAATTGCAGTGATGGAGGTTGGTCATGGCGGCGTGAGGGTGAGGCCTGTGGAGGCTTCCACCACTGATGCGTCCAAGAGGAGGAGGATTGCTTCTGGGGAGCTGCGAACGTCGCCTTCGTCTAATGTTGAGCTGAGAAGCAACTGTTGCTACGTGAACTCGCCGCCGGATTCACCGTCGCCGGCCCAGTCGGAGAATTATGTTGAGCAAGTTCTCGGTGATTTGTGCGCCAGCTCATGCGCCGATCACGCTCCGGAGTCTCGTTGTTCGAGCAACGAGCCCGGTGAGGTCGTGAGGAGCAGCTTGAGATCTGCAGATCTGGAGGCCAAGGGTTTCGAAACTGAAAACTCAACGTATAGCGACGGCAGATTCAGTAGAGAGACCACTCCAGTGAGCGAGCTCTACGCTGATTCAGCTGAGATGGAGTCTACGGCGAAGACTACAGCGGCCAAACCGCGACGGAAATCTACGGCGGGAAAGATGCCGTCGACGGTTGAGATCGAAGAGTTCTTCTCCGCAGCGGAAAAGTACCAGCAACAGCGATTCGCAGAGAAGTACAACTACGATATCGTGAAGGATGCCCCCATGGAGGGCCGGTACCAGTGGGTTCGCTTGGAGCGATGA 705 54.04 MLLKLVNKERASCSEMKEYMSECETIVGIAVMEVGHGGVRVRPVEASTTDASKRRRIASGELRTSPSSNVELRSNCCYVNSPPDSPSPAQSENYVEQVLGDLCASSCADHAPESRCSSNEPGEVVRSSLRSADLEAKGFETENSTYSDGRFSRETTPVSELYADSAEMESTAKTTAAKPRRKSTAGKMPSTVEIEEFFSAAEKYQQQRFAEKYNYDIVKDAPMEGRYQWVRLER* 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4207532 4210487 - Vvi3g435 Vvi3g435 784110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g435 234 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 16 233 - -
Vvi3g435 234 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 4-RELATED 16 233 IPR044275 GO:0004861|GO:0045736|GO:0051726
Vvi3g435 234 Gene3D p27 181 234 IPR044898 -
Vvi3g435 234 Pfam Cyclin-dependent kinase inhibitor 189 232 IPR003175 GO:0004861|GO:0005634|GO:0051726
Vvi3g435 234 PIRSF CKI_KRP_plant 16 234 IPR044275 GO:0004861|GO:0045736|GO:0051726
Vvi3g435 234 MobiDBLite consensus disorder prediction 165 188 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g435 - - - vvi:100250434 438.728
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g435 Vvi7g1084 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g435 . . . . . . Bma05g00520 . Cmo19g00630 Cmo11g01354 . . . . Sed10g2039 Cpe04g00273 Cpe15g00495 Bhi05g01129 Tan02g0899 Cmetu01g0736 . Hepe02g0578 . . Cla02g00593 Cam02g0622 Cec02g0621 Cco02g0637 Clacu02g0626 Cmu02g0622 Cre02g0946 . . . . Lsi10g00565 Csa07g00769 . Cme01g00040 . . . . . . . . . Cmo02g00567 . Cma11g01758 Cma19g00611 . Car19g00464 . . . . . . . . . . . . . . . . . . Chy01g00046 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011348 2 1 1 2 0 1 2 0 1 1 1 1 2 1 1 2 1 0 2 0 1 1 1 1 1 0 1 1 1 1 31