Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g436 ATGGAGAGAGCCGCGCTGCTTCGCTCCATAACGTGTTCTACGCTCGCCTGCAACAGATTCTTCCTCCGCTCTTCTCATAGGCTATCTCTGCCCTCCGCTTCCTTCTCTTCCTCTCTCTCTCGCAGTCACCACCGTTCCTTTGGCACCCTCACTAGACGCTCCGTGCTCCGCCGTCACTGGCGATTGCTCCCCAGCTCCTCCTCGATTCCATCTACGCGATGTTTCTCTTCACTCTCCCCGAAAGCTATCGCCACTTCGCCAGAGCAAGCCTCTTCAGATGCTGTTGGAAGTCAAGATGATTTAGCTGAGAAGTACGGATTTGATAAAGTCTCAGAACAGTTTATCCAAGAATGTAAATCAAAGGCTGTGCTTTACAAACACAAAAAGACTGGTGCTGAAGTCATGTCTGTATCCAATGATGATGAGAACAAGGTTTTTGGGATTGTTTTTCGCACTCCTCCGAAGGATTCTACTGGGATTCCCCACATACTGGAGCATAGTGTATTGTGTGGATCAAGAAAGTATCCTTTAAAAGAACCATTTGTTGAATTATTGAAAGGGAGCTTGCACACATTTCTAAATGCATTCACATATCCTGATAGGACTTGCTATCCAGTTGCATCCACAAATACAAAGGATTTCTATAATTTGGTTGATGTATATCTGGATGCTGTCCTCTTCCCAAAATGTGTGGAGGACTTCCAGACCTTTCAACAGGAGGGTTGGCATTATGAGCTGAACAATCCTTCAGAAGATATATCATATAAAGGAGTCGTTTTCAATGAGATGAAAGGTGTTTACTCACAGCCCGATAATATATTAGGTCGGACAGCTCAACAGGCAAGCTTTCTAGATAAATATGGTGTGTGTGGCTATGAAGAACCCATTGGTTCTGCTCTGTTTCCAGACAATACCTATGGTGTTGATAGCGGAGGTGATCCAAAAGTTATTCCCAAACTCACGTTTGAGGACTTCAAGGAATTTCACCGTAAATATTACCACCCTGGCAATGCTAGGATATGGTTTTATGGAGATGATGATCCAAATGAGCGGCTACGCATCCTGAATGAGTATCTAGATTTGTTTGATACAAGTCCAGCTTCCAGTGAATCAAAGGTTGAACCACAAAAACTATTTTCAAACCCAGTCAGGATTGTTGAGAAATATCCTGCTGGAAAAGGTGGTGATCTGAGAAAAAAGCACATGGTATGCCTTAATTGGTTGCTCTCGGATAAGCCGTTAGACTTGGAAACTGAACTTACCCTTGGGTTTTTGGATCATCTTATGTTGGGAACTCCTGCTTCTCCATTGAGGAAAATTTTATTGGAAAGTGGTCTGGGAGATGCTATTGTTGGTGGTGGGATGGAAGATGAGCTCCTTCAACCCCAGTTTAGTATTGGGTTGAAGGGTGTTTCTGAAGATGACATTCATAAGGTAGAAGAATTAGTCATGAGTACGCTTAAAAGTTTAGCAAAGGAAGGCTTTAATTCAGAGGCTGTGGAGGCATCCATGAATACAATTGAGTTCTCTCTCAGGGAAAATAACACTGGATCATTTCCTCGTGGCTTGTCCTTGATGCTTCGCTCCATTGGGAAATGGATATATGATATGGATCCTTTTGAGCCATTGAAATATGAGAAACCTTTAATGGCCTTAAAAGCGAGAATAGCTGAGGAAGGTTCTAAAGCTGTGTTTTCTCCTTTGATAGAGAAATACATCCTGAACAATCCTCATTGTGTCACTGTTGAAATGCAGCCTGACCCAGAGAAAGCTTCTCGTGATGAAGCAGTTGAGAGAGAAATTCTGGAGAAAGTCAAGGCAGGTATGACAGAAGAAGATCTTGCTGAGTTAGCACGTGCTACACAGGAGCTACGATTGAAGCAGGAAACTCCTGATCCACCAGAAGCTTTAAAAAGTGTACCAAGCCTTTCTCTACTCGACATCCCCAAGGAACCTATCCATGTTCCCATAGAGATTGGAGTCATCAATGATGTCAAAGTTTTGCGACATGACCTCTTCACAAATGATGTCCTTTACACTGAGATTGTCTTTGATATGAGTTCACTAAAGCAAGACCTTCTTCCCTTGGTACCTCTTTTCTGTCAATCTTTGATGGAGATGGGTACAAAAGATATGGACTTTGTGCAACTAAATCAGTTAATTGGGAGGAAAACTGGAGGAATATCGGTTTATCCTTTCACTTCGTCTGTACGGGGGAAGGAATATCCTTGTAGCCACATAATTGTTCGGGGAAAAGCCATGGCAGGATGTGCAGAAGACCTATTTAACTTGGTTAATTGCATTCTTCAAGAAGTTCAATTCACAGACCAACAACGTTTTAAGCAGTTTGTTTCCCAAAGCAAAGCAAGAATGGAGAACCGATTAAGAGGCAGTGGCCATGGAATCGCAGCTGCAAGGATGGATGCAAAGTTGAATACTGCAGGGTGGATTGCTGAACAAATGGGTGGTGTTAGTTATTTGGAATTTCTGCAAGCTCTTGAAGAGAAAGTTGATCAGGATTGGATTGGGATCTCTTCATCTCTTGAGGAGATCCGCAAATCCTTACTTTCAAGGAAGGGTTGCTTGATAAACATGACATCTGAGGGAAAAAATCTTATGAACTCAGAAAAATACGTTAGCAAATTCCTTGATTTGCTTCCTGGCAGCTCTTCTGTTGAAAAAACTACTTGGAATGGTCGACTCTCTTCAGAAAATGAAGCTATTGTGATACCTACTCAGGTTAATTATGTTGGAAAAGCAACTAACATATATGACACCGGTTATCAACTCAAGGGCAGTGCATACGTAATTTCAAAATACATCAGTAATACATGGTTGTGGGATCGTGTGCGAGTTAGTGGTGGGGCCTATGGAGGTTTTTGTGATTTTGACACTCATTCAGGGGTATTCTCCTTCTTATCTTATCGAGACCCAAACTTGTTAAAAACACTTGATGTATATGATGGAACTGGGGATTTTCTACGTCAATTGGAAATGGATGATGATACTCTCACAAAAGCAATTATTGGGACCATAGGGGATGTAGATGCATACCAGCTACCTGATGCCAAGGGTTATAGTAGTTTGTTACGATACTTGTTGGGGGTAACAGAGGAAGAAAGGCAAAAGAGACGTGAAGAGATTTTGTCAACCAGTTTGAAGGACTTCAAGGAATTTGCAGATGCAATTGAGGCAGCTAAACATAAAGGGGTTGTGGTTGCAGTAGCATCTCCGGATGATGTTGATGCTGCAAACAAGGAGCATCCTAACTTCTTTCAAGTGAAGAAAGCCCTTTAA 3297 42.25 MERAALLRSITCSTLACNRFFLRSSHRLSLPSASFSSSLSRSHHRSFGTLTRRSVLRRHWRLLPSSSSIPSTRCFSSLSPKAIATSPEQASSDAVGSQDDLAEKYGFDKVSEQFIQECKSKAVLYKHKKTGAEVMSVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYLDAVLFPKCVEDFQTFQQEGWHYELNNPSEDISYKGVVFNEMKGVYSQPDNILGRTAQQASFLDKYGVCGYEEPIGSALFPDNTYGVDSGGDPKVIPKLTFEDFKEFHRKYYHPGNARIWFYGDDDPNERLRILNEYLDLFDTSPASSESKVEPQKLFSNPVRIVEKYPAGKGGDLRKKHMVCLNWLLSDKPLDLETELTLGFLDHLMLGTPASPLRKILLESGLGDAIVGGGMEDELLQPQFSIGLKGVSEDDIHKVEELVMSTLKSLAKEGFNSEAVEASMNTIEFSLRENNTGSFPRGLSLMLRSIGKWIYDMDPFEPLKYEKPLMALKARIAEEGSKAVFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAVEREILEKVKAGMTEEDLAELARATQELRLKQETPDPPEALKSVPSLSLLDIPKEPIHVPIEIGVINDVKVLRHDLFTNDVLYTEIVFDMSSLKQDLLPLVPLFCQSLMEMGTKDMDFVQLNQLIGRKTGGISVYPFTSSVRGKEYPCSHIIVRGKAMAGCAEDLFNLVNCILQEVQFTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWIAEQMGGVSYLEFLQALEEKVDQDWIGISSSLEEIRKSLLSRKGCLINMTSEGKNLMNSEKYVSKFLDLLPGSSSVEKTTWNGRLSSENEAIVIPTQVNYVGKATNIYDTGYQLKGSAYVISKYISNTWLWDRVRVSGGAYGGFCDFDTHSGVFSFLSYRDPNLLKTLDVYDGTGDFLRQLEMDDDTLTKAIIGTIGDVDAYQLPDAKGYSSLLRYLLGVTEEERQKRREEILSTSLKDFKEFADAIEAAKHKGVVVAVASPDDVDAANKEHPNFFQVKKAL* 1099
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4216319 4236204 - Vvi3g436 Vvi3g436 784111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g436 1098 SUPERFAMILY LuxS/MPP-like metallohydrolase 375 641 IPR011249 GO:0046872
Vvi3g436 1098 PANTHER PRESEQUENCE PROTEASE 765 1098 - -
Vvi3g436 1098 PANTHER PRESEQUENCE PROTEASE 73 765 - -
Vvi3g436 1098 Pfam Insulinase (Peptidase family M16) 154 229 IPR011765 -
Vvi3g436 1098 SUPERFAMILY LuxS/MPP-like metallohydrolase 643 899 IPR011249 GO:0046872
Vvi3g436 1098 SMART M16C_assoc_2 584 833 IPR013578 GO:0006508
Vvi3g436 1098 Gene3D - 616 1070 - -
Vvi3g436 1098 Gene3D - 369 607 - -
Vvi3g436 1098 Gene3D - 651 900 - -
Vvi3g436 1098 SUPERFAMILY LuxS/MPP-like metallohydrolase 105 365 IPR011249 GO:0046872
Vvi3g436 1098 Gene3D - 84 367 - -
Vvi3g436 1098 Pfam Peptidase M16 inactive domain 319 506 IPR007863 -
Vvi3g436 1098 Pfam Peptidase M16C associated 584 833 IPR013578 GO:0006508
Vvi3g436 1098 PANTHER BNAA01G26230D PROTEIN 765 1098 - -
Vvi3g436 1098 PANTHER BNAA01G26230D PROTEIN 73 765 - -
Vvi3g436 1098 SUPERFAMILY LuxS/MPP-like metallohydrolase 905 1087 IPR011249 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g436 K06972 PITRM1, PreP, CYM1; presequence protease [EC:3.4.24.-] - vvi:100255619 2099.32
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g436 . . . . . . . . Cmo19g00631 Cmo11g01352 . . . . Sed10g2040 Cpe04g00272 Cpe15g00496 Bhi05g01130 Tan02g0898 Cmetu01g1020 . Hepe02g0577 . . Cla02g00589 Cam02g0621 Cec02g0620 . Clacu02g0619 Cmu02g0614 . Cone12ag1102 . . . . Csa07g00770 . Cme01g00039 Blo04g00491 . . Bda14g00521 Bpe15g00893 . Bma03g00522 . . . . Cma11g01760 Cma19g00612 . Car19g00465 . . . . . . . . . . . . . . . . Lsi11g01018 . Chy01g00045 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008932 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 34