Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g438 ATGGCTCGATTTCTAAGATCGACTCTGATACCATATTTCAACTCAACTGAAATAGCTCACGATTTTCCACCGTTTCTCCGAGCATACACAGATGGGCGGGTGGAGAGGTTTTTCGGCACCGACGTGGTTCCACCGTCGGTCGATTCTGAAACTGGGGTTTCCACCAAAGACCCCTCTGCCTGGGCTCTCCCTACTGCACCACATACCACAACTACGTCACTTCTCTTTCTCGGGCAAGGCCCTGAAGCCTGGCTGAATGATCATTCTGATTTCAAGCGAGTTTTTCTTGCCGGAGACAGCGCCGGAGCCAATATTGCCCACAACATGGCTGCAAGAGCTGGGGTTGAAGGATTGGGTGGTGTGAAGCTGTCAGGAATTTGTCTACTTCATCCATATTTCGGCCGCAGAGAAGCTGATTGTGTGGATAACAGGTGGCTTTTCGTGTGTCCAACCTCGAGCGGGATAAACGACCCAATAATAAACCCGGCATCAGACCAGAATTTACGAAAATTAGGGTGCAGTAAGGTGCTGGTTTGTGTAGCAGAGAAGGATGGACTGAGAAAAAGGGGGTGGTTTTATTATGAGGTATTGGGTAAAAGTGGTTGGGGTGGGGCGTTGGAGATTGTGGAGACGGAAGGAGAAGATCATGTGTTTTTTTTGTTCAAGCCTGGTTGTGAGAAGGCTGTGGCTTTGATGAAAAGGCTGGCCTCTTTTATGAATCAAGACTAG 729 48.83 MARFLRSTLIPYFNSTEIAHDFPPFLRAYTDGRVERFFGTDVVPPSVDSETGVSTKDPSAWALPTAPHTTTTSLLFLGQGPEAWLNDHSDFKRVFLAGDSAGANIAHNMAARAGVEGLGGVKLSGICLLHPYFGRREADCVDNRWLFVCPTSSGINDPIINPASDQNLRKLGCSKVLVCVAEKDGLRKRGWFYYEVLGKSGWGGALEIVETEGEDHVFFLFKPGCEKAVALMKRLASFMNQD* 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4252222 4254466 + Vvi3g438 Vvi3g438 784113

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g438 242 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative serine active site. 94 106 IPR033140 -
Vvi3g438 242 PANTHER ARYLACETAMIDE DEACETYLASE 76 240 - -
Vvi3g438 242 PANTHER ARYLACETAMIDE DEACETYLASE 15 57 - -
Vvi3g438 242 SUPERFAMILY alpha/beta-Hydrolases 84 241 IPR029058 -
Vvi3g438 242 Pfam alpha/beta hydrolase fold 64 219 IPR013094 GO:0016787
Vvi3g438 242 Gene3D alpha/beta hydrolase 38 242 IPR029058 -
Vvi3g438 242 PANTHER CARBOXYLESTERASE 12 ISOFORM X1-RELATED 15 57 - -
Vvi3g438 242 PANTHER CARBOXYLESTERASE 12 ISOFORM X1-RELATED 76 240 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g438 - - - vvi:100262425 335.88
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g438 . . . . . . . Bma12g00465 . . . Cma20g00896 . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00291 . Chy11g00446 . . . . . . . . . . . Cmo20g00903 . . . . . . Bhi10g02091 Tan05g1416 Cmetu11g2337 . Hepe08g1077 . . . . . . . . . . . . Cme11g00528
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001193 1 6 2 2 1 3 2 3 3 1 2 3 2 1 2 2 3 5 2 3 1 4 5 2 3 7 2 2 2 1 78