Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g440 ATGGATCCAAAAGCAACTGAAATAGCTCACGATTTTCCACCGTTTCTCCGAGCATACACAGATGGGCGGGTGGAGAGGTTTTTCGGCACCGACGTGGTTCCACCGTCGGTCGATTCTGAAACTGGGGTTTCCACCAAAGACGTTGCAATTGCACCTGAAAGAGGCGTATCTGCGCGTATCTTCAAGCCAAACACCATCAATCCAGACCAGAAGCTCCCTCTGCTGATCTACTACCATGGCGGAGCCCTCTGCCTGGGCTCTCCCTACTGCACCATATACCACAACTACGTCACTTCTCTTGTCGCTGAAGCAAACATCATTGCAGTGTCTGTTGATTACAGACTGGCACCTGAACATCCCGTCCCCGTACCTCATGAAGATTCATGGGCTGCAACCCAGTGGGTGGTTTCCCATAGTCTTGGGCAAGGCCCTGAAGCCTGGCTGAATGATCATTCTGATTTCAAGCGAGTTTTTCTTGCCGGAGACAGCGGCGGAGCCAATATTGCCCACAACATGGCTGCAAGAGCTGGGGTTGAAGGATTGGGTGGTGTGAAGCTGTCAGGAATTTGTCTACTTCATCCATATTTCGGCCGGAGAGAAGCTGATTCAGACCAGAATTTACGAAAATTAGGGTGCAGTAAGGTGCTGGTTTGTGTAGCAGAGAAGGATGGACTGAGAAAAAGGGGGTGGTTTTATTATGAGGTATTGGGTAAAAGTGGTTGGGGTGGGGCGTTGGAGATTGTGGAGACGGAAGGAGAAGATCATGTGTTTTTTTTGTTCAAGCCTGGTTGTGAGAAGGCTGTGGCTTTGATGAAAAGGCTGGCCTCTTTTATGAATCAAGACTAG 846 49.65 MDPKATEIAHDFPPFLRAYTDGRVERFFGTDVVPPSVDSETGVSTKDVAIAPERGVSARIFKPNTINPDQKLPLLIYYHGGALCLGSPYCTIYHNYVTSLVAEANIIAVSVDYRLAPEHPVPVPHEDSWAATQWVVSHSLGQGPEAWLNDHSDFKRVFLAGDSGGANIAHNMAARAGVEGLGGVKLSGICLLHPYFGRREADSDQNLRKLGCSKVLVCVAEKDGLRKRGWFYYEVLGKSGWGGALEIVETEGEDHVFFLFKPGCEKAVALMKRLASFMNQD* 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4261887 4262850 + Vvi3g440 Vvi3g440 784115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g440 281 PANTHER ARYLACETAMIDE DEACETYLASE 5 202 - -
Vvi3g440 281 PANTHER ARYLACETAMIDE DEACETYLASE 203 279 - -
Vvi3g440 281 Gene3D alpha/beta hydrolase 15 281 IPR029058 -
Vvi3g440 281 Pfam alpha/beta hydrolase fold 75 198 IPR013094 GO:0016787
Vvi3g440 281 SUPERFAMILY alpha/beta-Hydrolases 8 280 IPR029058 -
Vvi3g440 281 PANTHER CARBOXYLESTERASE 12 ISOFORM X1-RELATED 203 279 - -
Vvi3g440 281 PANTHER CARBOXYLESTERASE 12 ISOFORM X1-RELATED 5 202 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g440 - - - vvi:100262425 564.303
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g440 . . . Bda08g00850 . . . . . . Cma02g00445 Cma20g00895 . . . . . . . . . . . . . . . . . . . . . Cone3ag1108 . Lsi10g00295 . Chy11g00445 . . . . . . . . . . Cmo02g00454 Cmo20g00901 . . . . . . Bhi10g02089 Tan05g1411 . . Hepe08g1073 . . Cla09g01700 Cam09g1796 Cec09g1859 Cco09g1949 . . Cre01g0711 . . . Cme11g00519
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002370 4 3 1 1 2 2 0 2 2 2 2 2 3 2 2 4 2 2 3 2 2 4 3 1 1 2 1 2 2 1 62