Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g444 ATGAAAAAGATTGTTTCCTTCCTCAACCAAGAATCAAAAGCTTCCTCTCCTCTTCTACATCCATGGCGGTGGCTTCTCCTTCGAGTCCGCTTTCTCTCCTCGCTTCGACGCCTACCTCAAGTCCCTAGTATCACAAGCCAACGTCATTGCTACGCTAATCTGAGTCGGGTTTTCATCGCCGGAGACAGCGCCGGAGCGAACATTTCACATACATTAATGGTTCGGGTCGGGTCTCTCGGATTAGCGGGTGCGAACGTGGTTGGGATGGTTTTGGTGCACCCGTATTTTGGAGGCACGACTGATGACGGGGTGTGGCTCTACATGTGTCCAAACAACGACTGTGGAAAATCACGGGGAGAGACACACGTGGTCATCTCGTCCGAAACAGGACTATCTGCCCGAATCTTCTTACCCGATACAGCCCATCCGATCGAGAAACTGCCGCTTCTGTTCTACATCCACGGCGGAGGCTTCTGTATGCGATCTGCCTTCGGTATCGACTATCACAACTACGTCTCCACTCTGGTTTCCCAAGGAAATGCCATCGCTGTTTCTCCCTGGTTGATCAATCATGCCGACTTTGACCGGATTTTTATCGTCGGAGACAGTGCCGGAGGTAATATATCTCATACAATGGCGGTTCGGGTCGGGACGATTGGGTTGGCGGGTGTGAGGGTTGTTGGAGTGGTGATGGTTCATCCATTTTTTGGAGGAACGATTGATGATGAGATGTGGATGTACATGTGTACAGATGATGATAAAATGTGGCTGTACATGTGCCCTACCAATGGTGGGTTGGAAGATCCTAGGATGAAGCCGGCTGCAGAGGACCTGGCCAGGCTAGGGTGTGAAAAGGTGTTGGTGTTTGTGGCAGAGAAGGATCATCTGAGGGAAGTAGGGTGGAATTACTACGAGGAGTTGAAGAAAAGCGGGTGGAAAGGGACAGTGGAGATTGTGGAGAACCATGGGGAGGAGCACTGTTTCCATCTCCATGACCTCAGTTACGAGAAGTCTGTGGATCTCATCAAACAGATCGCTTCCTTCATCAACAGAGAGTAG 1059 50.61 MKKIVSFLNQESKASSPLLHPWRWLLLRVRFLSSLRRLPQVPSITSQRHCYANLSRVFIAGDSAGANISHTLMVRVGSLGLAGANVVGMVLVHPYFGGTTDDGVWLYMCPNNDCGKSRGETHVVISSETGLSARIFLPDTAHPIEKLPLLFYIHGGGFCMRSAFGIDYHNYVSTLVSQGNAIAVSPWLINHADFDRIFIVGDSAGGNISHTMAVRVGTIGLAGVRVVGVVMVHPFFGGTIDDEMWMYMCTDDDKMWLYMCPTNGGLEDPRMKPAAEDLARLGCEKVLVFVAEKDHLREVGWNYYEELKKSGWKGTVEIVENHGEEHCFHLHDLSYEKSVDLIKQIASFINRE* 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4277142 4282861 - Vvi3g444 Vvi3g444 784119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g444 352 PANTHER ARYLACETAMIDE DEACETYLASE 185 253 - -
Vvi3g444 352 PANTHER ARYLACETAMIDE DEACETYLASE 50 114 - -
Vvi3g444 352 PANTHER ARYLACETAMIDE DEACETYLASE 122 185 - -
Vvi3g444 352 PANTHER ARYLACETAMIDE DEACETYLASE 253 350 - -
Vvi3g444 352 SUPERFAMILY alpha/beta-Hydrolases 52 104 IPR029058 -
Vvi3g444 352 Pfam alpha/beta hydrolase fold 49 98 IPR013094 GO:0016787
Vvi3g444 352 Pfam alpha/beta hydrolase fold 183 329 IPR013094 GO:0016787
Vvi3g444 352 SUPERFAMILY alpha/beta-Hydrolases 108 351 IPR029058 -
Vvi3g444 352 Gene3D alpha/beta hydrolase 115 187 IPR029058 -
Vvi3g444 352 Gene3D alpha/beta hydrolase 24 114 IPR029058 -
Vvi3g444 352 Gene3D alpha/beta hydrolase 188 352 IPR029058 -
Vvi3g444 352 PANTHER CARBOXYLESTERASE 12-RELATED 185 253 - -
Vvi3g444 352 PANTHER CARBOXYLESTERASE 12-RELATED 122 185 - -
Vvi3g444 352 PANTHER CARBOXYLESTERASE 12-RELATED 253 350 - -
Vvi3g444 352 PANTHER CARBOXYLESTERASE 12-RELATED 50 114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g444 - - - vvi:100265900 385.956
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g444 Blo02g00821 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00303 . . . . . . . . . . . . . . . . . . . Cpe05g01218 Bhi10g02086 . . . Hepe08g1070 . . Cla09g01704 Cam09g1801 Cec09g1862 Cco09g1954 . . Cre01g0706 . Csa02g01193 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0071257 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1