Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g446 ATGGCAGACGATCTCTGTTTCTTCACCAAGGATTCCTTCGTCTTCAAGGCTCCTAAGAAATCTCCATTGGTGTTGAGGATGATTGTTTTGGTGTTTGCAATGGTTTGTGGGGTTTATATTTGCTCGATCTGTCTAAAGCAAATTAGCACCACAGCCACAGCTGGGTTCCTAAATGTCGAATTGACTGAAAGGCCGTGTGAGAAGCCTAATATTGAACCATCAGAAGTTCGTTATGTGCACTTCCCGAAACCCATATCCTATAGCAGGGCTGAATGTGCATGCAATCCTGTACGATATTTTGCCATCTTATCAACACAAAGATCTGGGAGCGGGTGGTTTGAGACCTTATTGAATAGCCATATCAACATTAGCTCAAATGGAGAGATTTTCTCTGTTAAAGTTAGAAGGAGCAATATTTCTTCAATCACAGAAACTTTGGATAAAATCTATAATCTAGACTGGCTCAGTAGTGCTTCCAAGAATGAGTGCACAGCTGCCGTTGGGCTGAAGTGGATGCTTAATCAGGGATTGATGCAGAATCATAAAGAGATAGTAGAATATTTCAACACGAGGGGTGTTTCATTGATTTTCCTCTTCAGAAGAAATCTGTTGAGGAGGATGATTTCAATGCTTGCCAATTCTTATGATCGAGAAGCCAAGCAACTAAATGGAACCCACAAGTCTCACGTACATTCACCTCGTGAGGCTGAGATACTTGCCCAATATAAGCCATCGATTAATGCAACTTTGCTGATACGGGATCTGAAGCAAGTAGAAGATACAGTTGCCAAAGCTTTACAGTACTTCAATAGCACCAGACACACAATTTTCTACTATGAGGATGTGATAAAAAACCGCACGAAACTGGTTGATGTTCTGAACTTTCTTAAAGTTCCACAAAGGGATCTTAGGAGTCGCCAAGTGAAGATACATAAAGGGTCGTTATCTGAACAGGTCGAGAACTGGGACGAAGTCCTAAAGACTCTCAAAGGAACCCAGTATGAAAGCTTCCTCCACGCTGATTATCAAATATGA 1035 41.45 MADDLCFFTKDSFVFKAPKKSPLVLRMIVLVFAMVCGVYICSICLKQISTTATAGFLNVELTERPCEKPNIEPSEVRYVHFPKPISYSRAECACNPVRYFAILSTQRSGSGWFETLLNSHINISSNGEIFSVKVRRSNISSITETLDKIYNLDWLSSASKNECTAAVGLKWMLNQGLMQNHKEIVEYFNTRGVSLIFLFRRNLLRRMISMLANSYDREAKQLNGTHKSHVHSPREAEILAQYKPSINATLLIRDLKQVEDTVAKALQYFNSTRHTIFYYEDVIKNRTKLVDVLNFLKVPQRDLRSRQVKIHKGSLSEQVENWDEVLKTLKGTQYESFLHADYQI* 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4299947 4306720 + Vvi3g446 Vvi3g446 784121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g446 344 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 1 342 - -
Vvi3g446 344 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 325 IPR027417 -
Vvi3g446 344 Gene3D - 97 327 IPR027417 -
Vvi3g446 344 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 1 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g446 - - - vvi:100253782 681.789
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g446 Vvi18g811 ECH
Vvi3g446 Vvi7g1091 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g446 . Blo15g00732 Bda06g01046 Bda08g00847 Bpe07g00394 Bpe12g00059 . Bma12g00468 Cmo19g00632 Cmo11g01351 . . . . Sed10g2042 Cpe04g00271 Cpe15g00497 Bhi05g01131 Tan02g0894 Cmetu01g2176 . Hepe02g0576 . . Cla02g00588 Cam02g0620 Cec02g0619 Cco02g0636 Clacu02g0618 Cmu02g0613 Cre02g0944 Cone12ag1104 Cone8ag1144 . . . Csa07g00771 . Cme01g00038 . Blo13g00571 Bda15g00032 . . . . Bma08g00797 . . . Cma11g01761 Cma19g00613 . Car19g00466 . . . . . . . . . . . . . . . . Lsi11g01019 . Chy01g00044 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003442 4 1 1 2 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 5 3 48