Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g447 ATGCACGGATCAACCGACGAGATTAAAACCCTCTGGGTCGGGGATCTCCATCAATGGATGGACGATAATTACCTCCGTACTTGCTTCGGTCACACCGGCGAGGTTTCTTCCATAAAGATAATTCGTAATAAGCAGACTGGACAGTCTGAGGGATATGGATTTGTTGAGTTCTTTTCGCGTGCTACAGCTGAGAAAATTTTGCACAGCTATAATGGAACCCTAATGCCAAATACAGAGCAGCCCTTTCGCCTCAATTGGGCAACTTTCAGCACGGGTGATAGACGTACTGATGCTGGTTCTGATCTGTCTATATTTGTGGGAGATCTAGCTTCAGATGTTACAGATGCATTATTGCAGGAAACTTTTGCTACTAGATATCCATCTGTTAAAGGTGCAAAGGTTGTCACTGATTCAAACACTGGCCGCTCAAAAGGTTATGGTTTTGTTAGGTTTGGTGATGAAAATGAGAGGTCAAGGGCCATGAATGAAATGAATGGCATCTATTGTTCAAGTAGGCCCATGAGAATTGGTGTGGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAGTCTTTCTCTCAGTTTGGTGAGGTTGTATCTGTAAAAATACCAGTTGGAAAAGGATGTGGATTTGTACAATTTGCTAACAGAAACAGTGCCGAGGATGCACTACAGAGATTGAATGGGACTGTTATTGGCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAGGGGTATGGTGGCGGCTATGGATATGCAATGCCACAGAATGATCCAAACATGTATGCTGCAGCTGCAACTTATGGTGCTTCTTAG 1029 45.0 MHGSTDEIKTLWVGDLHQWMDDNYLRTCFGHTGEVSSIKIIRNKQTGQSEGYGFVEFFSRATAEKILHSYNGTLMPNTEQPFRLNWATFSTGDRRTDAGSDLSIFVGDLASDVTDALLQETFATRYPSVKGAKVVTDSNTGRSKGYGFVRFGDENERSRAMNEMNGIYCSSRPMRIGVATPKKASGYQQQYSSQALVLAGGNASNGAVAQGSQANGDSTNTTIFVGGLDSEVTDEDLRQSFSQFGEVVSVKIPVGKGCGFVQFANRNSAEDALQRLNGTVIGKQTVRLSWGRNPASKQWRNDSNNQWNGAYYGGQGYGGGYGYAMPQNDPNMYAAAATYGAS* 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4306719 4311753 + Vvi3g447 Vvi3g447 784122

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g447 342 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 223 286 IPR000504 GO:0003723
Vvi3g447 342 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Vvi3g447 342 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 174 IPR000504 GO:0003723
Vvi3g447 342 SUPERFAMILY RNA-binding domain, RBD 5 87 IPR035979 GO:0003676
Vvi3g447 342 SUPERFAMILY RNA-binding domain, RBD 96 202 IPR035979 GO:0003676
Vvi3g447 342 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 293 IPR000504 GO:0003723
Vvi3g447 342 CDD RRM3_NGR1_NAM8_like 220 291 - -
Vvi3g447 342 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 4 341 - -
Vvi3g447 342 Gene3D - 202 325 IPR012677 -
Vvi3g447 342 CDD RRM1_SECp43_like 10 90 - -
Vvi3g447 342 Gene3D - 90 195 IPR012677 -
Vvi3g447 342 CDD RRM2_SECp43_like 101 180 - -
Vvi3g447 342 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 4 341 - -
Vvi3g447 342 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 181 IPR000504 GO:0003723
Vvi3g447 342 SMART rrm1_1 10 85 IPR000504 GO:0003723
Vvi3g447 342 SMART rrm1_1 103 177 IPR000504 GO:0003723
Vvi3g447 342 SMART rrm1_1 222 289 IPR000504 GO:0003723
Vvi3g447 342 SUPERFAMILY RNA-binding domain, RBD 213 322 IPR035979 GO:0003676
Vvi3g447 342 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 89 IPR000504 GO:0003723
Vvi3g447 342 Gene3D - 8 88 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g447 - - - vvi:100258930 652.514
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g447 Vvi18g813 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g447 Blo02g00819 . Bda06g01045 . . . . Bma12g00469 . . Cma02g00443 Cma20g00892 Car02g00300 Car20g00769 . . . . . . . . . . . . . . . . . Cone6ag0064 Cone9ag0078 Cone14ag1139 Cone15ag1157 Lsi10g00304 . Chy11g00443 . . . . . . . . . . Cmo02g00452 Cmo20g00899 . . . . . Cpe05g01219 . . . . . . . Cla09g01707 Cam09g1803 Cec09g1863 Cco09g1956 . . Cre01g0704 . Csa02g01195 . Cme11g00517
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117