Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g448 ATGGAGGATGATCTGATTGAAGGTGGACTCCCTGGTCAGCCATCAGGGGTGTTGTTTAAGCAGTATTCTGGTTATGTAACTGTCAATGAACTCAAAGGGCGAAACCTTTTCTATTATTTTGCTGAGGCAGCTGAGGATCCATCATCTAAGCCTCTGCTTCTGTGGCTGAATGGAGGGCCTGGTTGTTCATCCCTTGGAGTAGGTGCCATGGTGGAGATTGGACCTTTTGGGGTTAAACCAGATGGCAAAACGCTCTATTTAAGACCGTATGCCTGGAACAAAGTGGCAAATACTCTGTTCTTAGAGTCTCCAGTAGGTGTTGGGTTCTCATACTCTAATAATTCCTTCGAGTATAATGAAAATGGCGATAAACGGACTGCTCAAGACACATACGCCTTCTTGATCAATTGGTTCAGAAGATTTCCCCACTATAAGAATAGGGACTTCTATATCATGGGAGAGAGTTATGCAGGTTTTTACATTCCAGAGCTGGCTGATACAATCATCAGGAGGAACATGAAGGCAGTCTCTTCCTCTATCATCCACCTTAAAGGGATTATGATTGGGAATGGGATAATGAACGATATGACGGACAACAGAGGATTCTACGATTATCTTTGGAGCCATGCCTTGATTTCTGATAAAACCCATCAAGGACTAGTCGAATACTGCAAGTTCCCCGACAGCTATGAGTGTAAGAAGCTTGAAGATCATATTGAGTTGGAAGTTGGATTGATAGATTTTTACAACATATATGCCCCAGTTTGCCTTCGCGCCTCAAACTCTTCGAGAAAACCGAAACGCCATGGAGGGTTTGATCCCTGTGAAGCAGATTATGTCCTGAGATATCTCAATCTTCCTCAAGTACAAGAAGCTTTGCATGCCAACAGAACCAAAATACCTTATGCTTGGGAAGTTTGCAGCTCTGTGATCACTTCTTGGACGGACAGCCCATCAACCATGTTTCCGATATACAAGAGGCTAATTTCCTCTGGTCTTCAGATACTAATTTACAGTGGTGATGTGGATGCAGTTGTATCAGTTGTTGGCACCCGGTACTCCATTAATGCCTTAAACCTTAAAGTCATCAGACCTTGGCATCCTTGGTCGGAGAGCACAAAAGTGGTGGGTGGATACAGGGTTGTTTATGAGGGACTAACGTTCGCAACAATTCGAGGGGCAGGGCATGAAGTCCCAAGGTTTCAGCCCCGCAGGGCTTTTGCTTTGATGGAGTCCTTTGTAGCAGGAAAATAG 1254 44.42 MEDDLIEGGLPGQPSGVLFKQYSGYVTVNELKGRNLFYYFAEAAEDPSSKPLLLWLNGGPGCSSLGVGAMVEIGPFGVKPDGKTLYLRPYAWNKVANTLFLESPVGVGFSYSNNSFEYNENGDKRTAQDTYAFLINWFRRFPHYKNRDFYIMGESYAGFYIPELADTIIRRNMKAVSSSIIHLKGIMIGNGIMNDMTDNRGFYDYLWSHALISDKTHQGLVEYCKFPDSYECKKLEDHIELEVGLIDFYNIYAPVCLRASNSSRKPKRHGGFDPCEADYVLRYLNLPQVQEALHANRTKIPYAWEVCSSVITSWTDSPSTMFPIYKRLISSGLQILIYSGDVDAVVSVVGTRYSINALNLKVIRPWHPWSESTKVVGGYRVVYEGLTFATIRGAGHEVPRFQPRRAFALMESFVAGK* 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4315101 4317754 + Vvi3g448 Vvi3g448 784123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g448 417 Gene3D - 321 416 - -
Vvi3g448 417 ProSitePatterns Serine carboxypeptidases, serine active site. 151 158 IPR018202 GO:0004185
Vvi3g448 417 PRINTS Carboxypeptidase C serine protease (S10) family signature 88 100 IPR001563 GO:0004185|GO:0006508
Vvi3g448 417 PRINTS Carboxypeptidase C serine protease (S10) family signature 101 111 IPR001563 GO:0004185|GO:0006508
Vvi3g448 417 PRINTS Carboxypeptidase C serine protease (S10) family signature 137 162 IPR001563 GO:0004185|GO:0006508
Vvi3g448 417 PRINTS Carboxypeptidase C serine protease (S10) family signature 386 399 IPR001563 GO:0004185|GO:0006508
Vvi3g448 417 Pfam Serine carboxypeptidase 11 415 IPR001563 GO:0004185|GO:0006508
Vvi3g448 417 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 1 417 IPR001563 GO:0004185|GO:0006508
Vvi3g448 417 ProSitePatterns Serine carboxypeptidases, histidine active site. 386 403 IPR033124 GO:0004185
Vvi3g448 417 Gene3D alpha/beta hydrolase 2 257 IPR029058 -
Vvi3g448 417 Gene3D - 275 312 - -
Vvi3g448 417 SUPERFAMILY alpha/beta-Hydrolases 9 416 IPR029058 -
Vvi3g448 417 PANTHER CARBOXYPEPTIDASE 1 417 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g448 K16297 SCPL-II; serine carboxypeptidase-like clade II [EC:3.4.16.-] - vvi:100264100 845.499
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g448 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001535 1 2 4 0 1 2 3 2 2 2 2 2 4 3 3 4 2 3 3 2 3 2 1 3 2 2 2 2 3 5 72