Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g449 ATGAGACCAAACATATTCAACCAAAACATTAGAAAAATGAACAGATATGATCTGCTAGGGAAACTTATGCAGGCTCAAAGGTCGAAGAGGCAGTCAGAGGGTCACTCAATTGAGTCTATGTCCACAGAGTATTCACCAGTCTATATGGGGTCTCAAGATGGGTTGAAGGATGGTGATAGGATCCAAGCATTGCCAGGGCAACCCAATGGGTTGAATCTGGATCAGTACTCGGGGTATGTCACTGTTGACCCTCAGGCTGGGAGAGCACTCTTCTACTACTTTGTGGAGTCTCAGAACTCTTCTTCTAAGCCTCTTGTCTTGTGGCTTAATGGAGGACCAGGATGCTCCTCTTTAGGATCTGGGGCAATGATGGAGCTGGGGCCATTCCGAGTCAACGGTGATGGCAATACTCTCTCTTACAACGAATACGCATGGAGCAATGTGGCAAACATCCTCTTCCTGGAGTCTCCTGCTGGGGTTGGATTTTCTTATTCAAATACGACATCAGACTACGACAAAAGTGGAGATAAGCAGACTGCTGAAGACAACTACACCTTTCTTCTGAACTGGTTGGAAAGGTTTCCTGAGTACAAAACCAGAGATTTCTTCATCACCGGAGAAAGTTATGCAGGGCACTACGTGCCTCAGCTCTCCCAGAAAATCCTTCAAAACAACAAGATCACCAACCAAACTGTCATCAACCTAAAAGGAATCGCTATAGGGAATGCATGGATAGACTATGAGACAGGACTGAAGGGAATGTACGACTTTTTCTGGACACACTCTCTAATATCCGATGAAATCAATGAGGGAATCAACTTAAACTGCAATTTTTCATCTGAGACAACAATCTCGGATGTCTGTGAACAATATCTTGATGCTGCAGATGCAGCTGTAGGCTATATCTATATATATGACATATATGCTCCCTTATGCTCTTCATCCTCAAACAGTACCCGACCGATATCAGTATTTGATCCATGTTCCGAGGACTACATCCAAACTTACTTGAACATTCCTGAAGTGCAAAAATCTATGCATGCAAACGTCACGAATATCCCAGGTCCATGGGAGTCTTGCAACGACGCTATTTTCTACGGTTGGAAGGACATGCCATTGACAGTGTTGCCAGTGATTGAGGAGCTCATGGTCAGTGGGATAAGTGTTTGGATCTATAGTGGTGACACAGATGGTAGAGTGCCAACAACATCGACCCGCTACTCCATAAACAATCTTGGAACATCGGTTAAGACTCCATGGTACCCCTGGTACACCCAAGGCGAGGTCGGCGGATATGCGGTAGGATACAAAAACCTATCATTTGTGACCATAAGAGGAGCTGGACACTTTGTTCCAAGTTATCAACCAACCAGGGCTCTTGCCTTCTTCTCATCCTTCTTGGCCGGAAAGCTTCCATCTGCAGATGAACCCTAA 1434 45.12 MRPNIFNQNIRKMNRYDLLGKLMQAQRSKRQSEGHSIESMSTEYSPVYMGSQDGLKDGDRIQALPGQPNGLNLDQYSGYVTVDPQAGRALFYYFVESQNSSSKPLVLWLNGGPGCSSLGSGAMMELGPFRVNGDGNTLSYNEYAWSNVANILFLESPAGVGFSYSNTTSDYDKSGDKQTAEDNYTFLLNWLERFPEYKTRDFFITGESYAGHYVPQLSQKILQNNKITNQTVINLKGIAIGNAWIDYETGLKGMYDFFWTHSLISDEINEGINLNCNFSSETTISDVCEQYLDAADAAVGYIYIYDIYAPLCSSSSNSTRPISVFDPCSEDYIQTYLNIPEVQKSMHANVTNIPGPWESCNDAIFYGWKDMPLTVLPVIEELMVSGISVWIYSGDTDGRVPTTSTRYSINNLGTSVKTPWYPWYTQGEVGGYAVGYKNLSFVTIRGAGHFVPSYQPTRALAFFSSFLAGKLPSADEP* 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4318214 4325277 + Vvi3g449 Vvi3g449 784124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g449 477 Gene3D - 328 365 - -
Vvi3g449 477 Gene3D alpha/beta hydrolase 54 323 IPR029058 -
Vvi3g449 477 ProSitePatterns Serine carboxypeptidases, histidine active site. 439 456 IPR033124 GO:0004185
Vvi3g449 477 Gene3D - 375 469 - -
Vvi3g449 477 PRINTS Carboxypeptidase C serine protease (S10) family signature 141 153 IPR001563 GO:0004185|GO:0006508
Vvi3g449 477 PRINTS Carboxypeptidase C serine protease (S10) family signature 154 164 IPR001563 GO:0004185|GO:0006508
Vvi3g449 477 PRINTS Carboxypeptidase C serine protease (S10) family signature 190 215 IPR001563 GO:0004185|GO:0006508
Vvi3g449 477 PRINTS Carboxypeptidase C serine protease (S10) family signature 439 452 IPR001563 GO:0004185|GO:0006508
Vvi3g449 477 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 18 470 IPR001563 GO:0004185|GO:0006508
Vvi3g449 477 PANTHER CARBOXYPEPTIDASE 18 470 - -
Vvi3g449 477 SUPERFAMILY alpha/beta-Hydrolases 58 471 IPR029058 -
Vvi3g449 477 Pfam Serine carboxypeptidase 65 468 IPR001563 GO:0004185|GO:0006508
Vvi3g449 477 ProSitePatterns Serine carboxypeptidases, serine active site. 204 211 IPR018202 GO:0004185
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g449 K16297 SCPL-II; serine carboxypeptidase-like clade II [EC:3.4.16.-] - vvi:100248712 960.674
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g449 Vvi18g815 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g449 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017874 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 3 6