Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g45 ATGCGAACTCTTTGTGATGCTTGCGAGAGCGCAGCAGCTATCCTGTTCTGCGCCGCAGACGAGGCCGCCCTCTGCCGTGCCTGCGACGAAAAGGTCCATATGTGTAACAAACTTGCTAGTCGGCATGTAAGAGTTGGGCTGGCTGACCCAAGTGATGTTCCTCGATGTGATATATGTGAAAATGCACCTGCTTTCTTTTATTGTGAAGTCGATGGAACTTCTCTTTGCCTGCAATGTGATATGATTGTACATGTTGGAGGTAAAAGAACCCATGGAAGATATCTGCTATTAAGGCAGAGAGTTGAGTTTCCAGGGGATAAGCCTGGCCGTCTTGAGGAACTAAGGTTACAATCTGGTGAGCCTGGTGAAGCAAGAAGGGAACAGAATTGGCCACCTATGATGACATTGAGAGAGACCCAGCCAAATCACATGGCCTCTTCTGTTCCAATGTTAGAGAATAACACTCATGGTGATGGCAAGATGGACAATAAATTGATTGATCTGAATGCTCGGCCCCAAAGAGTACATGGGCAAACTTCAAATAACCAGAGTATGGATGTACATAGTGGCACTAATCATGAATCTGAAAGTGTAGTTCCTGTTGGATCCTTCAAAAGAGAGCCTGAAAAGTAA 633 45.66 MRTLCDACESAAAILFCAADEAALCRACDEKVHMCNKLASRHVRVGLADPSDVPRCDICENAPAFFYCEVDGTSLCLQCDMIVHVGGKRTHGRYLLLRQRVEFPGDKPGRLEELRLQSGEPGEARREQNWPPMMTLRETQPNHMASSVPMLENNTHGDGKMDNKLIDLNARPQRVHGQTSNNQSMDVHSGTNHESESVVPVGSFKREPEK* 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 594822 598576 - Vvi3g45 Vvi3g45 783720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g45 210 CDD Bbox1_BBX-like 4 47 - -
Vvi3g45 210 SMART bboxneu5 51 96 IPR000315 GO:0008270
Vvi3g45 210 SMART bboxneu5 1 47 IPR000315 GO:0008270
Vvi3g45 210 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Vvi3g45 210 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Vvi3g45 210 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 210 - -
Vvi3g45 210 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vvi3g45 210 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 210 - -
Vvi3g45 210 CDD Bbox1_BBX-like 56 96 - -
Vvi3g45 210 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Vvi3g45 210 MobiDBLite consensus disorder prediction 174 210 - -
Vvi3g45 210 Gene3D Classic Zinc Finger 2 92 - -
Vvi3g45 210 MobiDBLite consensus disorder prediction 174 198 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g45 Vvi4g1083 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14659 PF00643 zf-B_box 2.70E-07 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g45 - - vvi:100257242 442.195