Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g452 ATGCGCACACCCGTCCTTTCTTCACTCTCTCTTCTCCGCTCCCTCTCCCCCTCTCTCCACCACCGCTTCCTGTGCTCCCTCTCCCTCTCCAACTACTCGAAATCCTTTTTCTTCCCATTACCCACTACTAATATCCGTCATTCATCTCTATTTCGGCGGCCCCCATTGGCGAAGCCGCTGAGTAGTTTTGTCGAACAGGTGGTAGGTGAATCGGAGAGGGACGAGAATGAGGGTTTTTCTCGCGGAGGGGAGGGCGAGAGTTTCGACTTCGGGGTTGCTTTTGGTTCCACTGATTTGAGGCACTTGAGTTCGCCTTCTTTAGAGGTTAAGGAGCTGGAGGAGCTGCCGGAGCAGTGGAGGAGGTCGAAGTTGGCTTGGCTGTGCAAGGAACTGCCGGCGCACAAGCCTGCGACTTTGATTCGGATACTGAATGCACAGAAGAAGTGGGTTAGGCAGGAGGATGCGACTTATATTGCGGTGCATTGTATGCGGATTCGTGAGAATGAAACTGGATTTAGAGTGTACAAATGGATGATGCAACAACATTGGTTTCAATTTGATTTTGCTCTTGCTACTAAGCTAGCAGATTATATGGGGAAGGAGCGGAAGTTTTCAAAATGTCGGGAGATATTTGATGACATAATTAAGCAGGGACTTGTGCCATGTGAATCTACATTTCATATTCTAATCATTGCCTATCTTAGTGCATCAGTACAAGGCTGCCTGGATGAAGCATGTGGCATTTACAATCGTATGATTCAGTTGGGAGGTTACCAGCCCCGGCTTAGCTTGCACAATTCTCTCTTCCGGGCTCTTGTTGGCCAACCAGGAGGCTCTTCAAAATACTTTCTCAAACAGGCGGAGTTCATTTTCCATAACTTGGTGACATTTGGATTCGAGATACACAAAGATGTTTATGGTGGCCTAATTTGGCTACATAGCTATCAGGATACCATAGATAGAGAAAGGATAGCATCACTAAGGGAAGAGATGCAATTAGCAGGAATTGAAGAAAGCAGAGATGTGCTTTTGTCCATCTTGAGAGCTTGCTCGAAGGAAGGAGACGTGGAAGAAGCTGAAAAAACTTGGCTCAAACTCCTCCATTCTGATTGTGCTATTCCTTCTCAGGGTTTTGTGTACAGAATGGAAGTCTATGCAAAGGTAGGGGAGCCTATGAAATCTTTGGAGATATTCAGGGAGATGCAAGAGCAGTTGGGCTCCACCAGTGTTGTGGCATATCATAAAATCATAGAGGTGTTATCTAAAGCTCAAGAAATTGAACTTGTAGAGTCTCTTATGACAGAGTTCATAAACAGTGGGATGAAACCCCTCATGCCATCCTATATTGATCTAATGAATATGTATTTCAATTTAAGCTTGCATGATAAATTGGAGGCAGCCTTCTACGAGTGCCTGGAGAAATGTCGTCCAAATAGAGCTATTTACAATATTTACATGGATTCTTTGGTACAAATTGGCAACCTTGATAAGGCTGAGGAGATCTTCAACCAAATGTATAGTAATGGGGCAATTGGTGTCAATACTAAATCATGCAACACTATTTTAAGTGGATATCTCTCTTGTGGAGATTACTTGAAAGCTGAAAAGATATATGATTTGATGTGCCAGAAGAAATATGCTATTGATGCTCCATTGATGGAAAAGCTTGATTATGTTCTAAGCTTGAGCAGGAAAGTTGTTAAGAGACCTGTGAGCCTGAAGCTAAGCAAAGAACAACGGGAGATTTTGATTGGTTTGCTGTTAGGTGGTTTGCAGATGGAATCGGATGAAGAGAGGAAGAATCATGTGATTTATTTTGAGTTCAATGAGAACTCTGGTGCACATTCTGTTTTGAGGAGACATATACATGAGCAGTACCATGAGTGGTTAAATTCTTCCAGTAAGCTAAGTGATGACAATGATGATGTACCATACAAATTTTCTACCATCTCACATTCTTATTTTGGTTTCTATGCGGACCAGTTCTGGCCTAGAGGTCGACCCATGATTCCAAAGTTAATCCATCGGTGGTTGTCACCACGTGTTCTTGCTTACTGGTATATGTATGGAGGCCACAGAACATCATCTGGGGACATTTTGTTAAAGCTAAAGGGAAGTCGTGAGGGTGTTGAGAAGGTCGTCAGAACATTGAAAGCACAATCAATGGATTGCCGGGTCAAGAGGAAAGGAACTGTGTTTTGGATAGGATTGCTGGGAAGTAATTCTACCTGGTTCTGGAAACTGATTGAACCATATATTCTGGATGATGTGAAAGATTTTGTCAAAGCTGGCTGCCAAAATACCATTAGCTTTGGCAGTGGGTCTGATACCGATGAAAATGCTGCCGATTACAGTGACAATGAGAATTCATAG 2373 43.32 MRTPVLSSLSLLRSLSPSLHHRFLCSLSLSNYSKSFFFPLPTTNIRHSSLFRRPPLAKPLSSFVEQVVGESERDENEGFSRGGEGESFDFGVAFGSTDLRHLSSPSLEVKELEELPEQWRRSKLAWLCKELPAHKPATLIRILNAQKKWVRQEDATYIAVHCMRIRENETGFRVYKWMMQQHWFQFDFALATKLADYMGKERKFSKCREIFDDIIKQGLVPCESTFHILIIAYLSASVQGCLDEACGIYNRMIQLGGYQPRLSLHNSLFRALVGQPGGSSKYFLKQAEFIFHNLVTFGFEIHKDVYGGLIWLHSYQDTIDRERIASLREEMQLAGIEESRDVLLSILRACSKEGDVEEAEKTWLKLLHSDCAIPSQGFVYRMEVYAKVGEPMKSLEIFREMQEQLGSTSVVAYHKIIEVLSKAQEIELVESLMTEFINSGMKPLMPSYIDLMNMYFNLSLHDKLEAAFYECLEKCRPNRAIYNIYMDSLVQIGNLDKAEEIFNQMYSNGAIGVNTKSCNTILSGYLSCGDYLKAEKIYDLMCQKKYAIDAPLMEKLDYVLSLSRKVVKRPVSLKLSKEQREILIGLLLGGLQMESDEERKNHVIYFEFNENSGAHSVLRRHIHEQYHEWLNSSSKLSDDNDDVPYKFSTISHSYFGFYADQFWPRGRPMIPKLIHRWLSPRVLAYWYMYGGHRTSSGDILLKLKGSREGVEKVVRTLKAQSMDCRVKRKGTVFWIGLLGSNSTWFWKLIEPYILDDVKDFVKAGCQNTISFGSGSDTDENAADYSDNENS* 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4346114 4351793 + Vvi3g452 Vvi3g452 784127

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g452 790 SUPERFAMILY Homing endonucleases 571 756 IPR027434 -
Vvi3g452 790 SUPERFAMILY HCP-like 350 547 - -
Vvi3g452 790 Gene3D Homing endonucleases 669 762 IPR027434 -
Vvi3g452 790 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 478 512 IPR002885 -
Vvi3g452 790 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 514 548 IPR002885 -
Vvi3g452 790 Gene3D Homing endonucleases 558 667 IPR027434 -
Vvi3g452 790 Pfam PPR repeat 383 403 IPR002885 -
Vvi3g452 790 Pfam PPR repeat 481 509 IPR002885 -
Vvi3g452 790 Pfam PPR repeat 517 544 IPR002885 -
Vvi3g452 790 Pfam PPR repeat 345 369 IPR002885 -
Vvi3g452 790 Pfam LAGLIDADG DNA endonuclease family 580 745 IPR004860 GO:0004519
Vvi3g452 790 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN OTP51, CHLOROPLASTIC 10 781 - -
Vvi3g452 790 TIGRFAM PPR: pentatricopeptide repeat domain 517 549 IPR002885 -
Vvi3g452 790 TIGRFAM PPR: pentatricopeptide repeat domain 481 509 IPR002885 -
Vvi3g452 790 Gene3D Tetratricopeptide repeat domain 444 557 IPR011990 GO:0005515
Vvi3g452 790 Gene3D Tetratricopeptide repeat domain 151 378 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g452 - - - vvi:100258959 1559.66
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g452 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .