Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g453 ATGATTAGGAGTAGGGTTTCACCAAATGTGTATACCTATAACATCTTGATTCGCGGATTTTGCAGTGTAGGGGAATTGCAGAAGGGTTTGGGTTGCTTTGGTGAAATGGAGAGAAATGGGTGTTTGCCGAATGTGGTTACTTATAATACCTTAATTGATGCATATTGCAAAATGGGGAGGATTGATGAAGCATTTGGGTTGTTAAAGTCAATGTCTTCGAAGGGTATGCAGCCAAATTTGATTTCATACAATGTTATCATTAATGGGTTGTGTCGAGAAGGGAGTATGAAGGAAGCATGGGAGATTCTTGAGGAGATGGGTTATAAGGGTTTTACTCCAGATGAGGTGACTTATAATACGCTCCTGAATGGGTATTGTAAGGAGGGTAATTTTCATCAAGCGCTTGTTATTCATGCGGAGATGGTGAGGAATGGTGTCTCTCCAAGCGTTGTTACTTACACTGCATTGATTAATAGTATGTGTAAGGCTCGAAATTTGAATCGAGCAATGGAGTTCTTTGATCAGATGCGCATTAGAGGGCTTCGTCCTAATGAGAGAACATATACAACCTTGATTGATGGGTTCTCCCGGCAGGGGCTTTTGAATGAAGCTTATCGGATTTTAAATGAGATGACTGAGAGTGGATTCTCACCTTCAGTTGTGACTTATAATGCATTCATCCATGGGCACTGTGTCTTGGAAAGAATGGAGGAGGCTCTAGGAGTGGTTCAGGAAATGGTGGAGAAAGGGTTGGCCCCTGATGTAGTAAGTTATAGTACAATTATATCTGGATTTTGTAGAAAAGGAGAGTTGGATAGAGCATTCCAAATGAAGCAGGAGATGGTGGAGAAGGGTGTGTCGCCAGATGCTGTTACATATTCATCACTCATTCAAGGTCTCTGTGAGATGAGGAGACTAACGGAAGCCTGTGATCTTTCCCAAGAGATGTTGGACATGGGCCTGCCTCCAGATGAATTTACATATACAACGCTGATCAACGCATATTGTGTAGAAGGAGATCTAAATAAGGCTCTTCATTTACATGATGAAATGATACATAAGGGCTTCCTTCCTGATGCTGTTACCTACAGTGTGCTTATTAATGGACTTAATAAACAAGCTCGCACAAGGGAAGCAAAGCGGCTTCTCTTCAAGTTGATTTATGAGGAGTCTGTTCCAAGTGATGTCACATATGACACACTGATAGAGAATTGCAGTAATATTGAATTCAAGAGCGTGGTGGCTCTCATTAAGGGATTTTGTATGAAGGGGTTAATGCATGAAGCAGATCGAGTTTTTGAATCTATGGTTGAGAGAAACCACAAACCTGGTGAGGCAGTTTATAATGTTATTATACATGGTCATTGTAGGGGTGGAAATTTGCCAAAGGCATTTAATTTATACAAGGAAATGATTCATTCTGGGTTTGTCCCTCATACTGTGACTGTCATCACTCTGATTAAAGCACTTTTCAAGGAGGGAATGAATGAGGAGATGAGTGAAGTCATAGGCGACACATTGAGAAGCTGTAGACTGAATGAGGCTGAGCTTGCAAAAGTTCTTGTTGAGATTAACCATAAAGAAGGGAACATGGAAGCAGTTCTTAATGTAAGCCGGTTATACAATAAACTATCCCTCAAATGCGTGGCATCATCGGTGCCACCAGGAGCCTTAACGCAAACATCCCAAAAAATTTTCTTAAGCAGAATTATTGCGAATTTTGACGGGACTGCCGTCGATGGCGCCGCACATGTTGGGGAGGGAGGTGAGCTCTTCAAAGGCTTGGGTGGTTTCGTGGAGACGGCGGCGACTGACGGGAATTTTGATGAATTCGGGGTAAAGTTTGGTGGCGAGGAGGCGAGTGACCATGTTGGTGATCTTGGAGATGAGGTAGGGTTCGAGCGAGTAGCGGGAGGAGAGGGTTTTGGCGGAGAAGCCGTGGGAGAGGCGAGAGAGGACCATGGCGACGGCGTAGTCCGAGGGGAGAGAGAGGTTGGAGAGGGCGATGTAGGGTTTGAGCTTGTCGACGACGGTGGTGAAAACGGGATAGGAGAGGCCGTAGAGCGATCGCCATTGGGCGTCTCGGAGAGGGGCTTCCATGGCCCAGATGTGCTCGGTGGAGAGTGCCCTGAAGGCGGAGACGGAGTAGTCGGAAAGAGGTGGTGGTGGGATCAAGGTGGTTGTGGAGGTGGAGGAGATTCGACAACATTAACAAGAAAGATTGATCCATTCTCTCTCTCTCACTCTCGCCGTCCTCTCCCTACCCTCCTCTCTAATTCACCGAAATTGCAGAGAGAAAGAGGAAGAAAAGGAAGCAGCCCTATACGACGTCGCAATGGGACAAGTGGACAACTCATGGAAATTATTCACATTATCAAAATTGAAAAAACAAAAATTACTCCTCGGTGTAACAACATTTCAAATGTTGGACTCCTTAATTCTAATACAGTCTTTTGGAATTGGGTTGACATTCTACCTTCACAATTTGTGATCCCCTTTCAAAGTGTTTTGCAAAACAATTTCAAAATACAAAAACAAAGTGATTTCAAAAACTAA 2556 43.97 MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTLRSCRLNEAELAKVLVEINHKEGNMEAVLNVSRLYNKLSLKCVASSVPPGALTQTSQKIFLSRIIANFDGTAVDGAAHVGEGGELFKGLGGFVETAATDGNFDEFGVKFGGEEASDHVGDLGDEVGFERVAGGEGFGGEAVGEAREDHGDGVVRGEREVGEGDVGFELVDDGGENGIGEAVERSPLGVSERGFHGPDVLGGECPEGGDGVVGKRWWWDQGGCGGGGDSTTLTRKIDPFSLSHSRRPLPTLLSNSPKLQRERGRKGSSPIRRRNGTSGQLMEIIHIIKIEKTKITPRCNNISNVGLLNSNTVFWNWVDILPSQFVIPFQSVLQNNFKIQKQSDFKN* 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4359738 4367121 - Vvi3g453 Vvi3g453 784128

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g453 851 Gene3D Tetratricopeptide repeat domain 213 281 IPR011990 GO:0005515
Vvi3g453 851 Gene3D Tetratricopeptide repeat domain 142 212 IPR011990 GO:0005515
Vvi3g453 851 Gene3D Tetratricopeptide repeat domain 282 353 IPR011990 GO:0005515
Vvi3g453 851 Gene3D Tetratricopeptide repeat domain 1 72 IPR011990 GO:0005515
Vvi3g453 851 Gene3D Tetratricopeptide repeat domain 73 141 IPR011990 GO:0005515
Vvi3g453 851 Gene3D Tetratricopeptide repeat domain 354 411 IPR011990 GO:0005515
Vvi3g453 851 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Vvi3g453 851 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Vvi3g453 851 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Vvi3g453 851 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 235 296 - -
Vvi3g453 851 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 253 538 - -
Vvi3g453 851 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 1 256 - -
Vvi3g453 851 Pfam PPR repeat 6 37 IPR002885 -
Vvi3g453 851 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Vvi3g453 851 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Vvi3g453 851 SUPERFAMILY HCP-like 53 383 - -
Vvi3g453 851 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Vvi3g453 851 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Vvi3g453 851 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 444 478 IPR002885 -
Vvi3g453 851 Pfam PPR repeat family 253 301 IPR002885 -
Vvi3g453 851 Pfam PPR repeat family 187 231 IPR002885 -
Vvi3g453 851 Pfam PPR repeat family 444 492 IPR002885 -
Vvi3g453 851 Pfam PPR repeat family 113 162 IPR002885 -
Vvi3g453 851 Pfam PPR repeat family 43 92 IPR002885 -
Vvi3g453 851 Pfam PPR repeat family 326 371 IPR002885 -
Vvi3g453 851 Pfam PPR repeat 415 440 IPR002885 -
Vvi3g453 851 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Vvi3g453 851 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Vvi3g453 851 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Vvi3g453 851 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Vvi3g453 851 Gene3D Tetratricopeptide repeat domain 412 545 IPR011990 GO:0005515
Vvi3g453 851 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Vvi3g453 851 MobiDBLite consensus disorder prediction 744 779 - -
Vvi3g453 851 PANTHER OS06G0111300 PROTEIN 235 296 - -
Vvi3g453 851 PANTHER OS06G0111300 PROTEIN 253 538 - -
Vvi3g453 851 PANTHER OS06G0111300 PROTEIN 1 256 - -
Vvi3g453 851 TIGRFAM PPR: pentatricopeptide repeat domain 187 220 IPR002885 -
Vvi3g453 851 TIGRFAM PPR: pentatricopeptide repeat domain 415 444 IPR002885 -
Vvi3g453 851 TIGRFAM PPR: pentatricopeptide repeat domain 447 478 IPR002885 -
Vvi3g453 851 TIGRFAM PPR: pentatricopeptide repeat domain 116 150 IPR002885 -
Vvi3g453 851 TIGRFAM PPR: pentatricopeptide repeat domain 81 115 IPR002885 -
Vvi3g453 851 TIGRFAM PPR: pentatricopeptide repeat domain 326 360 IPR002885 -
Vvi3g453 851 TIGRFAM PPR: pentatricopeptide repeat domain 11 45 IPR002885 -
Vvi3g453 851 TIGRFAM PPR: pentatricopeptide repeat domain 291 325 IPR002885 -
Vvi3g453 851 TIGRFAM PPR: pentatricopeptide repeat domain 46 79 IPR002885 -
Vvi3g453 851 TIGRFAM PPR: pentatricopeptide repeat domain 221 255 IPR002885 -
Vvi3g453 851 TIGRFAM PPR: pentatricopeptide repeat domain 256 290 IPR002885 -
Vvi3g453 851 TIGRFAM PPR: pentatricopeptide repeat domain 151 185 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g453 - - - vvi:100855388 1083.17
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g453 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011593 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 2 2 29