Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g46 ATGGGGGCACTAAGTGGGGAGGAGCTGGCACGGTGGGAGAAGATGCAAGCGGCGACTGCTCGTGAGGAGAAGATTCTTGTTCTGGTTAGGCTGAGGCCTTTGAGTGAGAAGGAGATTGCAAGGAATGAAGTTTCAGACTGGGAATGCATCAATGAGAACACTGTCTTGTTCAGGAATAGCCTGCAGGAGAGGTCCATGTTCCCAACTGCATATTCATTTGACAAAGTATTTCGAGGTGACTGCACCACGAGGCAGGTGTATGAGGAAGCAGCCAAGGAAATCGCTCTTTCAGTTGTCAATGGTATTAACTCGAGTATCTTTGCATATGGGCAAACTAGCAGTGGAAAGACATACACCATGATTGGAATAACTGAATACACAGTAGCAGACATATATGATTATATACAAAATCATGAGGAAAGGGCATTTGTTCTTAAGTTCTCTGCAATGGAAATCTACAATGAAGCTGTCAGAGACCTCCTTAGCACAGATAATCTTCCACTTAGGCTCCTAGATGATCCAGAGAGAGGGACTATTGTGGAGAAATTGACTGAGGAAACTCTGAGAGACTGGAGCCATCTAAAGAACCTTCTATCCATTTGTGAAGCTCAAAGACAGATAGGGGAGACTTCCCTGAATGAAACAAGCTCCCGATCTCATCAAATTCTAAGATTGACAATTGAAAGTTCTGCTCGTGAATTCTTAGGCAAAGGCAACTCTACCACCCTTGCAGCCAGTGTGAATTTTGTTGATTTGGCGGGAAGTGAACGGGCATCTCAAGCAATGTCAGCTGGGGCAAGATTGAAAGAAGGTTGCCACATAAATCGCAGTCTATTGACCCTTGGAACGGTCATACGGAAGCTGAGCAAGGGAAGACAAGGACATGTCAATTATAGAGATTCTAAGCTAACACGGATATTGCAACCCAGCTTGGGAGGCAATGCTAGAACTGCCATTATCTGCACTTTGAGCCCTGCACGAAGCCATGTTGAGCAATCTAGAAACACTCTGTTGTTTGCTAGCTGTGCAAAAGAAGTCACTACAAAAGCACAGGTCAATGTGGTCATGTCTGATAAGGCCTTGGTAAAGCATTTACAAAAAGAATTGGCCAGATTGGAGAGTGAATTGAGAAGTCCAGCCCCTGCTTCTTCAACTTGTGATCATACAGCATTACTGAGAAAGAAAGATCTTCAGATTGACAAGATGGAGAAAGAGATAAGAGAGTTGACTAAGCTACGTGACATTGCTGAATCTCGGGTTGAGGATTTGCTACAAATGATTGGAAATGATCAATCTTCAAGTCAATGGACTGGAATTCGTAATGATCCTAAATCACAGGTAGGCATTAAATGGGAAGATGATTGTTCAGTATCAGAGGCTGATCCTGGTTGTCGGGATATAGGTGTCAGAAGCTTCAATACAACTCAGTATTCTGGCAGAGGCAGTGGGAGTAATACTCAGGAAAAATACCATCAGCTTCCACAGTACTCTGAAGGCCATTCTCCATTTGATGGACCTTCTTCACCGATATCAGTTGGAAATGGGTTTGTTAGGCCAGATCCACGTTGTGGTCAGGAGGAAATTGCACTTGAAGCTGGGGAAGATCCTGATGACCTTTACAAGGAAGTTCGATGTATTGAGATAGAAGAGTCCAGCAAGCACAAGAACCTCAAGTCCCTTGATACATCAACTGGTGAAAATGAAGGTATGGCAGTGTCTGGGAATGGAGATGTAACAGATGGGGAAATCATATCAGCCCCAACGAAGGGAGAAAGAGAAGTTAGTCACATCCAAAATGGTTTTACATATGGTGCATTGGAGCAGAAAATCCAGGATGTTCAAAAGACAATTGAATCTCTTGTCAGTCCTTACCCTGATGAACCATCTCCCTGGGCACTGGATGCAGATACACCAAGTTCTAGAAGCTTGACATTGACTAGGAGCTGGAGTTGCAGAGCGAATCTCATGACTGGTTCGTCTTCTCCCTGTGAGAAGGTAGAACAAAGACTGAGTACTCCACCTAGTGGATTTGAGAAAGACTTTCCTGGAAGACCAGAAAGTTTCCGAAGGAGGCATCCTCCATTAAACTATGGTGCCAACATGCCAAGGTTGTCAAGAACTGATTCGCAGTCTTCTTTTGGGAGTGCTTTTGTTGACGAGCTAAAAGCAGAGAAGACTTCTGCAGACGAGGATATTACTAGCATCCAGACTTTTGTTGCAGGTCTGAAAGAAATGGCTAAGCTTCAATATGAGAAGCAACTTGTTGATGGTCAGGTTGAGGAGACGGGGACAAGAGCTGATAAGCTTGAAAAGAATGTAAAAGACGTGGGCTTGGATCCAATGCAGGAAGGAACTCTTCCAGATTGGCCCTTGGAGTTTGAAAGGCAGCAGAGGGAGATAATTGAACTTTGGCAAACTTGCAATGTTTCATTGATCCACAGAACCTATTTCTTCCTGCTCTTCAGAGGTGATCCAATGGATTCCATTTACATGGAGGTAGAGCTTAGGAGACTTTCCTTCCTCAAAGAAACTTTTTCTCAGGGAAACCAGTCTCTGGAAGATGGTCGAACTCTCACACAGGCTTCAAGCATTAGGGCTCTTCGCCGTGAGAGGGAGACGCTGAGCAAGCTGATGCACAAAAGATTCTCAGAAGGGGAGAGAAATAGACTTTTCCAGAAGTGGGGTATCAAGTTGGACTCGAAGCGGAGGCGGCTGCAGCTGGCCCAGCGCCTGTGGAGCAACACGACAGATATGAGCCACGTCAATGAGAGTGCTGCCATTGTTGCAAAGCTGATCAAGTTTGTTGAGCAAGGACAGGCCCTCAAGGAGATGTTCGGGCTGAGCTTCACACCTCATCGCACCAGGAGAAGATCATATGGCTGGAAACACAGCATGGGGTCCCTTTTGTGA 2910 45.15 MGALSGEELARWEKMQAATAREEKILVLVRLRPLSEKEIARNEVSDWECINENTVLFRNSLQERSMFPTAYSFDKVFRGDCTTRQVYEEAAKEIALSVVNGINSSIFAYGQTSSGKTYTMIGITEYTVADIYDYIQNHEERAFVLKFSAMEIYNEAVRDLLSTDNLPLRLLDDPERGTIVEKLTEETLRDWSHLKNLLSICEAQRQIGETSLNETSSRSHQILRLTIESSAREFLGKGNSTTLAASVNFVDLAGSERASQAMSAGARLKEGCHINRSLLTLGTVIRKLSKGRQGHVNYRDSKLTRILQPSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRSPAPASSTCDHTALLRKKDLQIDKMEKEIRELTKLRDIAESRVEDLLQMIGNDQSSSQWTGIRNDPKSQVGIKWEDDCSVSEADPGCRDIGVRSFNTTQYSGRGSGSNTQEKYHQLPQYSEGHSPFDGPSSPISVGNGFVRPDPRCGQEEIALEAGEDPDDLYKEVRCIEIEESSKHKNLKSLDTSTGENEGMAVSGNGDVTDGEIISAPTKGEREVSHIQNGFTYGALEQKIQDVQKTIESLVSPYPDEPSPWALDADTPSSRSLTLTRSWSCRANLMTGSSSPCEKVEQRLSTPPSGFEKDFPGRPESFRRRHPPLNYGANMPRLSRTDSQSSFGSAFVDELKAEKTSADEDITSIQTFVAGLKEMAKLQYEKQLVDGQVEETGTRADKLEKNVKDVGLDPMQEGTLPDWPLEFERQQREIIELWQTCNVSLIHRTYFFLLFRGDPMDSIYMEVELRRLSFLKETFSQGNQSLEDGRTLTQASSIRALRRERETLSKLMHKRFSEGERNRLFQKWGIKLDSKRRRLQLAQRLWSNTTDMSHVNESAAIVAKLIKFVEQGQALKEMFGLSFTPHRTRRRSYGWKHSMGSLL* 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 607517 613848 + Vvi3g46 Vvi3g46 783721

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g46 969 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 377 IPR027417 -
Vvi3g46 969 Coils Coil 355 375 - -
Vvi3g46 969 ProSiteProfiles Kinesin motor domain profile. 24 346 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi3g46 969 ProSitePatterns Kinesin motor domain signature. 245 256 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vvi3g46 969 MobiDBLite consensus disorder prediction 468 488 - -
Vvi3g46 969 CDD KISc_CENP_E 24 346 - -
Vvi3g46 969 Gene3D Kinesin motor domain 15 376 IPR036961 -
Vvi3g46 969 Coils Coil 392 426 - -
Vvi3g46 969 MobiDBLite consensus disorder prediction 558 580 - -
Vvi3g46 969 Pfam Domain of unknown function (DUF3490) 792 951 IPR021881 -
Vvi3g46 969 MobiDBLite consensus disorder prediction 469 488 - -
Vvi3g46 969 SMART kinesin_4 22 354 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi3g46 969 MobiDBLite consensus disorder prediction 657 710 - -
Vvi3g46 969 PANTHER KINESIN-LIKE PROTEIN KIN-7F 6 969 - -
Vvi3g46 969 Pfam Kinesin motor domain 30 346 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi3g46 969 PRINTS Kinesin heavy chain signature 101 122 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi3g46 969 PRINTS Kinesin heavy chain signature 210 227 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi3g46 969 PRINTS Kinesin heavy chain signature 246 264 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi3g46 969 PRINTS Kinesin heavy chain signature 296 317 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi3g46 969 PANTHER CENTROMERE PROTEIN E 6 969 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g46 K11498 CENPE; centromeric protein E - vvi:100250389 1916.35
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g46 Vvi4g1085 ECH
Vvi3g46 Vvi18g1046 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g46 Blo02g00649 . . Bda08g00962 . Bpe12g00095 . . Cmo19g00704 . . . . . . Cpe04g00100 Cpe15g00563 Bhi05g01255 . . . . . . Cla02g00484 Cam02g0492 Cec02g0493 Cco02g0498 Clacu02g0496 Cmu02g0491 Cre02g0824 Cone12ag1189 Cone8ag1236 . Cone10ag1095 . Csa07g00039 . Cme01g01338 Blo04g00541 Blo13g00533 Bda15g01063 Bda14g00581 Bpe15g00840 Bpe05g00313 Bma03g00574 . . . . . Cma19g00692 . Car19g00536 . . . . . . . . . . . . . . . . Lsi11g01139 . Chy01g00742 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004297 2 1 3 1 3 1 2 1 1 1 1 1 3 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 43