Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g462 ATGGGTTTCACTTCTGGACAAGGAGTAGTCACCTTACTGGTGTTAACTGCTTCCCTGTTAGCGGTCGGTATGGCAAACAGACCCATTGCAGGTAAGCCTGCAAATCACTGGAATTCCGGCTTCAATCACAGCATTTGGGGTCCCAGAAACAATCCTTTCCACCCCAATAATACCCGGCCTCCCAAGAAGTTCATCGTCGGTGGATCGGAGCGCTGGCGCTACGGCTTTAACTACACTGATTGGGCTCTCAAGAATGGACCCTTCTACATTAACGATACTCTGGTGTTCAAGTATGATCCTCCAAACAGCACCACATTTCCTCACAGCGTATACTTGTTGCCAAACTTTGGGAGCTTCCTGACGTGCGACCTGAGTAGAGCCAAGCAAGTGGCTACGGTGGCGCAAGGAGGCAGCAAGGGGTTTGAGTTTGTGCTAAAGAACTTGTGGCCTCACTACTTCGCCTGCGGGGAACACAATGGGCTGCACTGCAAAGAGGGAATGATGAAGTTCTCTGTGATGCCGCTATTTCGTCCCTGCCATGGCTGA 546 51.1 MGFTSGQGVVTLLVLTASLLAVGMANRPIAGKPANHWNSGFNHSIWGPRNNPFHPNNTRPPKKFIVGGSERWRYGFNYTDWALKNGPFYINDTLVFKYDPPNSTTFPHSVYLLPNFGSFLTCDLSRAKQVATVAQGGSKGFEFVLKNLWPHYFACGEHNGLHCKEGMMKFSVMPLFRPCHG* 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4445630 4446279 - Vvi3g462 Vvi3g462 784137

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g462 181 SUPERFAMILY Cupredoxins 62 173 IPR008972 -
Vvi3g462 181 Pfam Plastocyanin-like domain 75 167 IPR003245 GO:0009055
Vvi3g462 181 PANTHER GLYCINE-RICH PROTEIN-LIKE 1 179 - -
Vvi3g462 181 Gene3D - 62 177 IPR008972 -
Vvi3g462 181 ProSiteProfiles Phytocyanin domain profile. 62 176 IPR003245 GO:0009055
Vvi3g462 181 PANTHER BNAC04G19690D PROTEIN 1 179 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g462 - - - vvi:100248603 389.423
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g462 Vvi18g822 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g462 . . Bda06g01042 . . . . . . . Cma02g00440 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g00446 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004690 1 1 0 1 1 1 4 0 0 0 1 0 2 0 1 2 0 3 0 1 1 4 0 3 2 1 2 1 2 6 41