Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi3g467 | ATGGCACAACTGAAACGTGAAGAACAAGAGATGGTGAATCAAGAAACCGCAGAAATGGAGAAGAAGGAGAGCAGCACCACAACCAGTGCTGCTGCTTCCTTCAAATTCAATGCCCAGGCACCTGAATTCGTGCCAAGATCACATACCCAGGTCCCCATTTCTGGTTATTTCTATCCATGTTTCCACTTGCTTGGTGGGGGTGCTGGCTCTGCAGATTGGTTGTATGTTGCGGATCAAGACCCTGTCCATTTCATTTCTAATTCCAATGGCTCTCTACCCAATTCTTCCAAGAATCTTCTCACCCATGATATTCAGCAAAAGATCATCAAACAGGTAGAGTACCAATTCAATGACATGAGTTTGCTTGCAAGTGACTCCTTGGCAAAACACATAAACAAAGATCCTGAAGGCTATGTTCCAATATCTGTTATTGCATCTTCTAAGAAAGTCAAGGCCCTTGTGAGTAATAACCAATTGCTTGCTCAAGCACTTCGCTCCTCTTCACAGCTTGTTGTAAGCAGTGATGGGAAGAAGGTTAGACGAAAGCACCTTTTCACTGAAAGAGACAAAGAGGAATTGCAGGCTCATACTGTGGTGGCAGAGAATCTACCTGAAGATCATTCTCATCAAAACCTCCAGAAAATATTCAGTGTTGTTGGAAGTGTGAAAAACATCCGAATATGTCATCCTCAGGAATCCAATAATTCCCGTTCCAAGGGTGACTTTTTTATCAGTAACAAGCTCCATGCACTCGTGGAATATGAATCTGTGGAGATAGCTGAGAAAGCAGTTGAGATGTTAAATGATGAAAGGAACTGGAGAAAGGGCCTCCGAGTAAGGATGCTGCTCAGACGCTCGCCAAAGTCTGTTTTAAAGAACAGGAGGTCAGAATTTGATGGGATTATGGATGAAGAAGAGGGACCACATCCTGAATTTTCAGAAGACTCCTCTCATCCTAATAATACAGAATTGGTTATTGAGAGTAATGCTGAAGAAAATTCAAGTGGATCAAAGAAAGGATGGGCACGAGGACGTGGGAAACCACGAGGACGAACTCAGATTACCTCTGGGAGGGGCCTGCTCGCTCCATCCCCACAATCAAGTGGCTCCAACCAGTTCGAAGCATCTGCCAAACAGATTACCAAGGGACCAAGAATGCCAGACGGGACAAGGGGCTTCACCATGGGACGAGGGAAGCCAATAAGTACTCCAGCTCTAGCAAGTCCACTCCTGGGGTGA | 1239 | 45.04 | MAQLKREEQEMVNQETAEMEKKESSTTTSAAASFKFNAQAPEFVPRSHTQVPISGYFYPCFHLLGGGAGSADWLYVADQDPVHFISNSNGSLPNSSKNLLTHDIQQKIIKQVEYQFNDMSLLASDSLAKHINKDPEGYVPISVIASSKKVKALVSNNQLLAQALRSSSQLVVSSDGKKVRRKHLFTERDKEELQAHTVVAENLPEDHSHQNLQKIFSVVGSVKNIRICHPQESNNSRSKGDFFISNKLHALVEYESVEIAEKAVEMLNDERNWRKGLRVRMLLRRSPKSVLKNRRSEFDGIMDEEEGPHPEFSEDSSHPNNTELVIESNAEENSSGSKKGWARGRGKPRGRTQITSGRGLLAPSPQSSGSNQFEASAKQITKGPRMPDGTRGFTMGRGKPISTPALASPLLG* | 413 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 4481839 | 4484778 | - | Vvi3g467 | Vvi3g467 | 784142 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi3g467 | 412 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
| Vvi3g467 | 412 | ProSiteProfiles | La-type HTH domain profile. | 98 | 189 | IPR006630 | - | |
| Vvi3g467 | 412 | SUPERFAMILY | RNA-binding domain, RBD | 189 | 293 | IPR035979 | GO:0003676 | |
| Vvi3g467 | 412 | Gene3D | - | 93 | 186 | IPR036388 | - | |
| Vvi3g467 | 412 | Coils | Coil | 5 | 25 | - | - | |
| Vvi3g467 | 412 | MobiDBLite | consensus disorder prediction | 357 | 378 | - | - | |
| Vvi3g467 | 412 | SMART | la | 102 | 182 | IPR006630 | - | |
| Vvi3g467 | 412 | PRINTS | Lupus La protein signature | 111 | 128 | IPR002344 | GO:0003723|GO:0005634|GO:0006396|GO:1990904 | |
| Vvi3g467 | 412 | PRINTS | Lupus La protein signature | 137 | 152 | IPR002344 | GO:0003723|GO:0005634|GO:0006396|GO:1990904 | |
| Vvi3g467 | 412 | PRINTS | Lupus La protein signature | 168 | 181 | IPR002344 | GO:0003723|GO:0005634|GO:0006396|GO:1990904 | |
| Vvi3g467 | 412 | PRINTS | Lupus La protein signature | 190 | 206 | IPR002344 | GO:0003723|GO:0005634|GO:0006396|GO:1990904 | |
| Vvi3g467 | 412 | PANTHER | LUPUS LA PROTEIN-RELATED | 1 | 403 | IPR045180 | - | |
| Vvi3g467 | 412 | SMART | rrm1_1 | 197 | 280 | IPR000504 | GO:0003723 | |
| Vvi3g467 | 412 | CDD | RRM_La_like_plant | 197 | 283 | IPR034878 | GO:0003723 | |
| Vvi3g467 | 412 | Gene3D | - | 187 | 289 | IPR012677 | - | |
| Vvi3g467 | 412 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 201 | 269 | IPR000504 | GO:0003723 | |
| Vvi3g467 | 412 | Pfam | Ataxin-2 C-terminal region | 31 | 48 | IPR009818 | - | |
| Vvi3g467 | 412 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 196 | 286 | IPR000504 | GO:0003723 | |
| Vvi3g467 | 412 | SUPERFAMILY | Winged helix DNA-binding domain | 99 | 191 | IPR036390 | - | |
| Vvi3g467 | 412 | ProSiteProfiles | SUZ-C domain profile. | 350 | 397 | IPR024642 | - | |
| Vvi3g467 | 412 | MobiDBLite | consensus disorder prediction | 295 | 412 | - | - | |
| Vvi3g467 | 412 | MobiDBLite | consensus disorder prediction | 314 | 336 | - | - | |
| Vvi3g467 | 412 | PANTHER | LA-RELATED PROTEIN 6C | 1 | 403 | - | - | |
| Vvi3g467 | 412 | Pfam | La domain | 108 | 165 | IPR006630 | - | |
| Vvi3g467 | 412 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Vvi3g467 | 412 | MobiDBLite | consensus disorder prediction | 295 | 313 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi3g467 | K15191 | LARP7; La-related protein 7 | - | vvi:100241743 | 797.734 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi3g467 | . | . | . | . | . | Bpe12g00064 | . | . | . | . | Cma02g00438 | . | Car02g00296 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cone12ag1111 | Cone8ag1153 | . | . | Lsi10g00312 | . | Chy11g00436 | . | . | Blo13g00567 | Bda15g00027 | . | . | . | . | . | Sed01g0334 | Cmo02g00443 | . | . | . | . | . | . | Cpe05g01224 | Bhi10g02075 | Tan05g1392 | Cmetu11g0139 | . | . | . | . | Cla09g01715 | Cam09g1809 | Cec09g1871 | Cco09g1964 | . | . | Cre01g0696 | . | Csa02g01201 | . | Cme11g00508 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0008129 | 1 | 1 | 1 | 0 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 2 | 2 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 2 | 2 | 1 | 35 |