Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g472 ATGAGCTCTGCACACTTGAGTTCGATTCGTTTTGATCGGGAATGGTTCAGGAAGAGTGAAACGAAGAGTTCAAATGGAAGGAAGCTTCATATTAGAGGATCAGTGACTTCATCCCCGCAAAGCGTGCAGTTTGCAGAGGCAAAAGCCGAGAAATCTGGAAAGGCAGTTCGGATTGGTGTACTTGGGGCCAGTGGCTACACTGGTTCAGAGATTGTTAGACTTCTGGCAAACCATCCACACTTTGGCATTACCCTCATGACTGCAGACAGAAAAGCTGGTCAATCAATTGGATCAGTATTTCCACATTTGATCACACAAGATTTACCAGATATGGTTGCTATCAAGGATGCAAAATTTTCTAATGTGGATGCTGTGTTTTGTTGTTTGCCACATGGAACCACACAGGACATAATCAAAGCTCTTCCCAAGAGTTTAAAGATTGTTGACCTTTCTGCAGACTTTCGTCTGCAAGAAATTGCTGAATATGAAGAATGGTATGGTCAGCCACACAGAGCCCCAGATTTGCAGAAAGAAGCAGTGTATGGCTTGACAGAGATTTTGAGGGAAGAAATTAAAGCTGCACGTCTTGTTGCCAATCCTGGCTGTTATCCTACAACCATTCAGCTTCCTCTTGTTCCTTTGTTGAAGGCTAATCTCATTGAAACAAGAAATCTCATTATTGATGCAAAATCTGGTGTGAGTGGAGCAGGTCGTGGTGCCAAGGAGGCAAATCTGTACACTGAAATAGCTGAAGGCATTCATTCTTATGGTATTACAAGGCATCGCCATGTTCCTGAGATTGAGCAGGGACTTTCAGATGCTGCACATGCAAAAGTGACTGTCAGCTTCACTCCTCACCTAATGCCAATGAGCCGTGGTATGCAATCAACTATATACGTGGAAATGACCCCAGGAGTCACAATTGAGGATTTGTACAAACAATTAAAGATTGCCTATGAGGACGAAGAATTTGTAATTTTGCTGGAGAAAGGAGTTGTTCCTCATACTCGAAATGTCCGTGGATCCAATTACTGTCTTCTGAATGTCTTTCCTGATCGAATCCCTGGACGAGCAATTATAGTATCTGTTATTGATAATCTTGTGAAGGGAGCTTCTGGTCAAGCCTTGCAGAATCTTAATGTGATGATGGGATTGCCGGAGAATACAGGACTTCTCTACCAGCCATTGTTTCCATAA 1197 42.94 MSSAHLSSIRFDREWFRKSETKSSNGRKLHIRGSVTSSPQSVQFAEAKAEKSGKAVRIGVLGASGYTGSEIVRLLANHPHFGITLMTADRKAGQSIGSVFPHLITQDLPDMVAIKDAKFSNVDAVFCCLPHGTTQDIIKALPKSLKIVDLSADFRLQEIAEYEEWYGQPHRAPDLQKEAVYGLTEILREEIKAARLVANPGCYPTTIQLPLVPLLKANLIETRNLIIDAKSGVSGAGRGAKEANLYTEIAEGIHSYGITRHRHVPEIEQGLSDAAHAKVTVSFTPHLMPMSRGMQSTIYVEMTPGVTIEDLYKQLKIAYEDEEFVILLEKGVVPHTRNVRGSNYCLLNVFPDRIPGRAIIVSVIDNLVKGASGQALQNLNVMMGLPENTGLLYQPLFP* 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4593423 4601048 - Vvi3g472 Vvi3g472 784147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g472 398 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 202 366 - -
Vvi3g472 398 PANTHER N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE, CHLOROPLASTIC-RELATED-RELATED 1 398 - -
Vvi3g472 398 ProSitePatterns N-acetyl-gamma-glutamyl-phosphate reductase active site. 197 213 IPR023013 GO:0003942
Vvi3g472 398 PANTHER N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE, CHLOROPLASTIC-RELATED 1 398 - -
Vvi3g472 398 Hamap N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 56 392 IPR000706 GO:0003942|GO:0006526
Vvi3g472 398 Pfam Semialdehyde dehydrogenase, dimerisation domain 211 369 IPR012280 GO:0008652|GO:0016620|GO:0046983
Vvi3g472 398 TIGRFAM argC: N-acetyl-gamma-glutamyl-phosphate reductase 56 398 IPR000706 GO:0003942|GO:0006526
Vvi3g472 398 Gene3D - 57 384 - -
Vvi3g472 398 Gene3D Dihydrodipicolinate Reductase; domain 2 200 366 - -
Vvi3g472 398 SMART Semialdhyde_dh_3 57 194 IPR000534 GO:0016620|GO:0051287
Vvi3g472 398 Pfam Semialdehyde dehydrogenase, NAD binding domain 57 193 IPR000534 GO:0016620|GO:0051287
Vvi3g472 398 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 56 227 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g472 K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] - vvi:100255475 789.645
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g472 . . . . . . . . . . Cma02g00436 . Car02g00290 . . . . . . . . . . . . . . . . . . . . Cone3ag1119 . Lsi10g00316 . Chy11g00431 . . . . . . . . . . Cmo02g00438 . . . . . . Cpe05g01227 Bhi10g02069 . . . Hepe08g1060 . . Cla09g01722 Cam09g1816 Cec09g1878 Cco09g1970 . . Cre01g0689 . Csa02g01205 . Cme11g00503
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010951 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31