Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g48 ATGGCGATGATGCAGTGGTGCGGCGCAGCGGCGAGGAGGATGATGACGACGATGACGGAGAGATCAACAGTGGCGTCTTCATCATCAGCAGCAATGGGGGTGCCGATTCTGTGCGGAAGAGGGGACAAGAAGACGAAGAAGGGGAAGAGGTTCAAGGGGTCGTACGGGAACGCGAGGCCCAAGAAGGAGAAGAAGATTGAGCGCATCAAGGACAAGGTTGAGAGTTTTTTTATCAATAAAATGGAGACTGGAGACAGCAAGACTTCTTCTAAGGAATCGGGAAAACTTAAAAGAAAAAGCCCCTTTTAG 309 50.49 MAMMQWCGAAARRMMTTMTERSTVASSSSAAMGVPILCGRGDKKTKKGKRFKGSYGNARPKKEKKIERIKDKVESFFINKMETGDSKTSSKESGKLKRKSPF* 103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 623791 624325 - Vvi3g48 Vvi3g48 783723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g48 102 MobiDBLite consensus disorder prediction 35 64 - -
Vvi3g48 102 PANTHER 30S RIBOSOMAL PROTEIN S31, CHLOROPLASTIC 1 74 IPR044695 -
Vvi3g48 102 MobiDBLite consensus disorder prediction 80 102 - -
Vvi3g48 102 PANTHER 30S RIBOSOMAL PROTEIN S31, MITOCHONDRIAL 1 74 - -
Vvi3g48 102 TIGRFAM ribo_THX: ribosomal small subunit protein bTHX 39 62 IPR030826 GO:0005840
Vvi3g48 102 MobiDBLite consensus disorder prediction 85 102 - -
Vvi3g48 102 Pfam Ribosomal protein S31e 15 65 IPR030826 GO:0005840
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g48 K19033 PSRP4, RPS31; 30S ribosomal protein S31 - vvi:100241858 132.494
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g48 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1206 . . Csa07g00040 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00741 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009347 0 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 0 1 1 1 1 1 34