Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g498 ATGGCTAACCTTCAAATAATGCAGGCCTTAGGCTGCTTTATTCTTCTGTCTTTCCTTTTCTCTTCGGTCTCATCCTTCTCTTTGGCTCTTTCTGATGCTGAGGCGTCCCTCATCGCCCGGCGTCAGCTCTTGTCTCTCCCTGAAGATGGTGATCTCCCTGATGACTTTGAATATGAGATTGATCTTGTTGTAACCTTTGCCAATTCTAGGCTCCGGAGAGCTTACATTGCTCTTCAGGCATGGAAAAATGCTATGTACTCTGACCCTTTTAACACAACTGGCAATTGGGTTGGTGCCAATGTGTGTGCCTATAATGGTGTCTTCTGTGCTCCGGCTCTTGATGATTCCAACTTGAGTGTTGTTGCTGGTGTTGATATTAACCATGCCGATATTGCTGGCTACCTTCCAGCTGAGCTGGGGCTTATGACTGATCTTGCGCTCTTCCATATCAATTCAAACCGGTTTTGTGGAATCATTCCCAAGAGTTTCTCTAGGCTGCTCCTTATGCATGAGTTTGACATCAGTAACAATCGGTTTGTTGGCCCCTTCCCCACAGTTGTCCTATCGTTGCCAGCCCTCAGGTACCTCGACATCAGGTTTAATGACTTTGAAGGCAGTCTGCCGGAAGAGGTCTTTGAGAAGGAACTTGATGCCTTGTTCGTGAATGATAACCGGTTCACAGGCTCCATCCCTGAAACTCTAGGCCAGTCAACAGCCTCGGTGGTTGTTTTCGCGAACAATAAACTCACTGGATGCATTCCAAAGAGCATTGGGAAGATGGCTAACACATTGAATGAGATCGTTTTCTCCAACAATGACTTTGGTGGCTGCTTGCCAACAGAGATCGGAATGCTGGGTAATGCGACTGTGTTTGCTGCGGGTTCTAACTCCTTCACTGGGGTCCTGCTCAAGAGCTTTTCAGGCCTAAAGAAGGTGGAGCATCTGGATGTTTCACACAATACACTAACTGGGTTTGTCCCTGACGGAATCTGCAAGTTGCCTAGTTTGTCGAATTTTACGTTCTCTTACAATTTCTTCAAGGGAGAGGCTCCATCGTGCCAGCCACCTTCGAGGGCGGACATAACATTGGATGACACAAGCAATTGTTTGTCGGACAGGCCAAAGCAGAAGTCAGCCAGAACATGTTTACCAGTTGTGAGTCGGCCGGTAGATTGTAGCAAGTCCAAGTGTGGAGGAAAATCTTCGCCCCCTAAACCAAGGCCACCAGTCCGTAGTCCAACACCACCCCCGGCTTCCACCCCACGGTCCCCACCTACCCCTAAACCACAACCCCATCCTTCTCCTTCCCCATCACCTCCTAAACCACAGCCTGCTCCTCCTAAGTCCACCCCACCAACGCCTAAACCAAGGCCCAGTCCGCCCAAGTCGGTCCCATCGACACCCAAACCGCAGCCTAGTCCTTCGCCAGTCTCTGCGCCTCCAACACCAACGCCAACACCAACACCAACACCAAAGCCAAAACCATCTCCACACCCACCTAAAACTTCCAGCCCACCTCCTCCTCATAAGGCCACCCCTCCAACCCCTACACCAAAGCCATCTCCAGCTCCGATTTCTTCTCCCCCACAACCGTCTCATCCATCTCCCCCGTCAGATTCTGCTGCTCCATCCCCTTCACCAAAACCAGCTCCTATTCCCCAAGTCCCACCACCGGCGTTTCCACCAGACCCGAAGAACTATTCGCCGATATTTTCACCACCGTTGCCAGGTCGTCCACCAGCAAAATCACCACTTCCACCAACCTCTCCAGCACCTGCTCCATCCCATACACCGCCGGTCCACTCTACACCACCCCCTGTCCGATCTCCTCCACCACCGGTTTTCTCTCCACCACCACCAATCCCCGTCCGATCTCCTCCACCACCAACCCCTGTCCGATCTCCTCCACCATCGGTTTCTTCTCCACCACCACCAGAACACTCCCCACCACCGCCGGTACAGTCCCCTCCACCACCCTTGTACTCACCATCTCCTCCAGTTCATTCCCCACCACCACCACCAGTCCACTCTCCACCACCACCAGTCCGCTCCCCACCACCACCAGTCTCCTCTCCTCCACCACCACCGGTCTCTTCTCCCCCACCACCAGTCCACTCCCCTCCTCCACCAGTCTCCTCTCCACCTCCACCAGTCTCTTCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATCGGATTTGAATACTCATCTCCGCCTCCACCAATGTTCCCAGGCTACTAAGTAG 2319 50.41 MANLQIMQALGCFILLSFLFSSVSSFSLALSDAEASLIARRQLLSLPEDGDLPDDFEYEIDLVVTFANSRLRRAYIALQAWKNAMYSDPFNTTGNWVGANVCAYNGVFCAPALDDSNLSVVAGVDINHADIAGYLPAELGLMTDLALFHINSNRFCGIIPKSFSRLLLMHEFDISNNRFVGPFPTVVLSLPALRYLDIRFNDFEGSLPEEVFEKELDALFVNDNRFTGSIPETLGQSTASVVVFANNKLTGCIPKSIGKMANTLNEIVFSNNDFGGCLPTEIGMLGNATVFAAGSNSFTGVLLKSFSGLKKVEHLDVSHNTLTGFVPDGICKLPSLSNFTFSYNFFKGEAPSCQPPSRADITLDDTSNCLSDRPKQKSARTCLPVVSRPVDCSKSKCGGKSSPPKPRPPVRSPTPPPASTPRSPPTPKPQPHPSPSPSPPKPQPAPPKSTPPTPKPRPSPPKSVPSTPKPQPSPSPVSAPPTPTPTPTPTPKPKPSPHPPKTSSPPPPHKATPPTPTPKPSPAPISSPPQPSHPSPPSDSAAPSPSPKPAPIPQVPPPAFPPDPKNYSPIFSPPLPGRPPAKSPLPPTSPAPAPSHTPPVHSTPPPVRSPPPPVFSPPPPIPVRSPPPPTPVRSPPPSVSSPPPPEHSPPPPVQSPPPPLYSPSPPVHSPPPPPVHSPPPPVRSPPPPVSSPPPPPVSSPPPPVHSPPPPVSSPPPPVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSDLNTHLRLHQCSQATK* 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4813763 4817457 - Vvi3g498 Vvi3g498 784173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g498 772 MobiDBLite consensus disorder prediction 354 374 - -
Vvi3g498 772 MobiDBLite consensus disorder prediction 402 717 - -
Vvi3g498 772 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 7 528 - -
Vvi3g498 772 MobiDBLite consensus disorder prediction 359 374 - -
Vvi3g498 772 MobiDBLite consensus disorder prediction 393 722 - -
Vvi3g498 772 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2 7 528 - -
Vvi3g498 772 SUPERFAMILY L domain-like 75 355 - -
Vvi3g498 772 Pfam Leucine rich repeat 295 344 IPR001611 GO:0005515
Vvi3g498 772 PRINTS Proline rich extensin signature 448 465 - -
Vvi3g498 772 PRINTS Proline rich extensin signature 397 409 - -
Vvi3g498 772 PRINTS Proline rich extensin signature 431 447 - -
Vvi3g498 772 PRINTS Proline rich extensin signature 409 430 - -
Vvi3g498 772 Gene3D Ribonuclease Inhibitor 74 374 IPR032675 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g498 - - vvi:100255508 782.711