Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g503 ATGCAGCGCATCCCCCAATCCTTCTCTGCTGCTGGCCACTTTCCTCCATCAAAGATGAGGGTTGTCCTGAGGAATTCAGCAGAGAAAGCTTGGGATGTGAGTTGCATCTATCATGCAAGAAGGCATTACTTTTCTAGAGGATGGGCTCCCTTTGCACGCTATAACAATCTCAAGCAAGGTGATGTCTGCATATTTGAGCTTGTCAATAAAGATGAAATGCAGGTCCATGTTTTATGA 237 45.15 MQRIPQSFSAAGHFPPSKMRVVLRNSAEKAWDVSCIYHARRHYFSRGWAPFARYNNLKQGDVCIFELVNKDEMQVHVL* 79
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4866535 4866772 + Vvi3g503 Vvi3g503 784178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g503 78 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 1 78 IPR044837 -
Vvi3g503 78 SUPERFAMILY DNA-binding pseudobarrel domain 3 77 IPR015300 -
Vvi3g503 78 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0723500 1 78 - -
Vvi3g503 78 CDD B3_DNA 3 78 IPR003340 GO:0003677
Vvi3g503 78 Pfam B3 DNA binding domain 3 76 IPR003340 GO:0003677
Vvi3g503 78 Gene3D - 1 78 IPR015300 -
Vvi3g503 78 ProSiteProfiles B3 DNA-binding domain profile. 1 78 IPR003340 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g503 - - - vvi:100264028 101.293
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g503 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14663 PF02362 B3 2.40E-15 CL0405 Vvi TF