Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g504 ATGCCCCCTGTCAATTTCAATTTTTATCGTCACCTTTCTTCCAATCCCACTCAACGGCTATCTCCCCTAGCTCAACCACACGCTTCAATTCTACGGAAACTCAAAGATCTCAAACCCCTTCAACAAATTCATGCCCAAATCATCACCTCTGGCCTCACCCACAACACCTTCCTCTCCAACAGTTTGATGAACGCATACGTATACTGTGGGCTTTTGGCTGACGCCAAGCAGATTTTTCACCATACACCGTACAAGAATGTGGTTTCCTGGACAATTTTGATATCTGGGCTTGCTAAAAATGACTGTTTTGTTGAGGCGATTGATGTGTTCCGCGAGATGATTATGGGTAACTTTAAGCCCAATGCCGTTACAATTTCGAGTGTTTTGCCTGCTTTTGCTAATCTAGGGTTGATCCGGATTGCGAAATCAGTGCACTGTTTTTGGGTTCGGGGTGGTTTTGAAGGTAATGTGTTTGTGGAGACGGCTTTGGTTGACATGTACTCGAAATTTGGGTGCATGGGTGTTGCGAGGCAGTTGTTTGAGAGTATGTCAGAGAGAAATGTTGTTACGTGGAATGCGATTGTTTCAGGTTATTCTGATCATGGGTTTTCTGAGGAAGCGATTGATCTTTTTAATTTGATGCGGAGAAAAGGGTTGCTAGTGGACTTCTATACGATAATGAGTTTGATACCTGCTTCTTTGAGTGTGGGTTGTTTGCAGGTGGGAACTGGAATCCATGGTTTTATAATTAGGACTGGGTATGAGAATGATAAACATATTAAAACTGCTCTAATGGATATATATGTAAGTCACAATTGTGTTGATGATGCTCATCGTGTATTTAGTGAGATGTCTGTGAAGGATGTGGCTGCATGGACACTAATGCTAACAGGCTTTTCAAGTGGTCGACATTGGGATAGAGCCATCAAACATTTCAATAAAATGTTGGGAATACAAAATTTAAAATTAGATTCTATTGCTTTGATGGGTATTCTTTCAAGCTGCAGCCATTCAGGAGCTTTGCAACAAGGTAGACGAGTTCATGCATTGGCTATAAAAACATGTTTTGCAAATAATATATTTGTAGGATCTGCTGTTATAGACATGTATGCAAACTGTGGAAACTTGGAAGATGCAAAAAGGTTTTTTTATGGGATGGGAGAAAAGGATGTTGTGTGCTGGAATGCTATGATTGCTGGTAATGGGATGAACGGGTATGGTACAGATGCAATTGATCTCTTCTTGCAAATGAAGGGTTCAGGTCTAGATCCAGATGAATCAACTTTTGTCAGTGTCTTGTATGCATGTAGTCATGCTGGGATGGTTTATGAAGGGCTCCAAATTTTTTATCATATGGTCAAAACCTCGCATGTCATTCCCAATTTGCAACATTATGCTTGTGTTATTGATATTCTTGGCCGTGCAGGGCAACTAGATGCTGCTTATTCATTCATTAATAACATGCCATTCCAGCCGGATTTTGATGTTTACAGCACCTTGCTTGGTGCATGTAGAATTCATGGTAACATAAAGTTGGGGCATGAGATTTCCCAGAAAATTTTTGAGATGGAGCCAAATGATGCTGGGTATTATGTTCTGCTTTCAAACATGTATGCTTTGGCAGGAAACTGGGAGGGTGTAAAGATGACCAGAGCATCACTGAGATCAAAGAGAATGAAGAAGGACCCAGGCTTTAGTTCAATTGAGATAAATCAAGAAATTTATACATTCATGGCAGGAGAAAAAGATCATCCTCAGTACTTCAAAATTGAAGGGATTTTAAAGGGCCTAATCTTGAAAATAAAAAAAGCAGGTTATGTACCCAACACTAATGTTCTACTCCAAGATGTTTCAGATGATATGAAGAAGGATATCTTGTATCATCACAGTGAAAAGATGGCCATTGCCTTTGGGTTGATGAGAACCAAGCCAGAGACAATCATTAGGATAACAAAGAATCTGCGCACCTGCGATGATTGCCACACTGCTAGCAAGTTTGTTTCCAAAGTTTTTGGAAGAGTACTTGTTATTAAAGATGCCAACCGGTTCCATGTTTTCCAAGATGGAGTTTGTTCTTGCAGAGACTATTGGTAA 2094 40.21 MPPVNFNFYRHLSSNPTQRLSPLAQPHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPETIIRITKNLRTCDDCHTASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW* 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4870221 4872315 - Vvi3g504 Vvi3g504 784179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g504 697 PANTHER OS07G0578800 PROTEIN-RELATED 1 658 IPR045215 GO:0003723|GO:0009451
Vvi3g504 697 TIGRFAM PPR: pentatricopeptide repeat domain 189 222 IPR002885 -
Vvi3g504 697 TIGRFAM PPR: pentatricopeptide repeat domain 88 122 IPR002885 -
Vvi3g504 697 TIGRFAM PPR: pentatricopeptide repeat domain 262 289 IPR002885 -
Vvi3g504 697 TIGRFAM PPR: pentatricopeptide repeat domain 392 426 IPR002885 -
Vvi3g504 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Vvi3g504 697 Pfam PPR repeat 291 316 IPR002885 -
Vvi3g504 697 Pfam PPR repeat 60 80 IPR002885 -
Vvi3g504 697 Pfam PPR repeat 262 287 IPR002885 -
Vvi3g504 697 Pfam DYW family of nucleic acid deaminases 605 697 IPR032867 GO:0008270
Vvi3g504 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Vvi3g504 697 PANTHER - 1 658 - -
Vvi3g504 697 Pfam E motif 507 569 IPR046848 -
Vvi3g504 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 86 120 IPR002885 -
Vvi3g504 697 Gene3D Tetratricopeptide repeat domain 143 246 IPR011990 GO:0005515
Vvi3g504 697 Gene3D Tetratricopeptide repeat domain 365 577 IPR011990 GO:0005515
Vvi3g504 697 Gene3D Tetratricopeptide repeat domain 23 142 IPR011990 GO:0005515
Vvi3g504 697 Gene3D Tetratricopeptide repeat domain 247 343 IPR011990 GO:0005515
Vvi3g504 697 Pfam PPR repeat family 186 230 IPR002885 -
Vvi3g504 697 Pfam PPR repeat family 85 133 IPR002885 -
Vvi3g504 697 Pfam PPR repeat family 389 436 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g504 - - - vvi:100253709 1405.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g504 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .