Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g505 ATGACCTTGCAGCGGATCCCTCCAGCTTTCATCAAGCATCTGGCTGGAGACATCTCCGATAGAGCAACCCTAACGTGTTCTTCCGGTGGCCATTGGGGTGTTACAGTGTGGAAGAATCCAGATGGGACCTATCTTGAGGATGGGTGGAAGGAGTTTATGAGAGAGAACAACTTAGGGGACGATGAGTTCTTGGTCTTTATATATGATGGGGATATGCGTTTCCATGTCAAAATTTTCGAGAAGAATGGAGTCAAAAGATCAGCCCCCATCTCTGATAACCCAACAGAAGAAGAAACAGGAGCCAGTAGTGGAAAACGGTCTCGGGGTAGGCCAAGGAAATACCCAGTTGGCTCCCTGCAGGGCCCTGTTGAAAGTTCAAGGACTCAGAAAACTAGGTCTTTCACCTCCAAATTTCCTTACTTTGAGTGTCTCATGACCAAGTCCTGTGTGGAGAAATGTTTTCTCCTGACCATTCCCAAAGCCTTCTCTCAGTCACACTTTCCCCCAGCAAAGCTGAAGGTTGTCCTCAGGAACTCAGCAGGGAAAACTTGGGAAGTGAACTGCATCTACCATGCAAAAAGACATTCCTTGTCTGGAGGGTGGAGTACCTTTGTACGTGAAAACAGTCTCAAGCAAGGTGGCACCTGCCGATTTGAGCTTGTTGAAAAAAATGTAATGCAGGTCCATGTTTTATGA 696 46.98 MTLQRIPPAFIKHLAGDISDRATLTCSSGGHWGVTVWKNPDGTYLEDGWKEFMRENNLGDDEFLVFIYDGDMRFHVKIFEKNGVKRSAPISDNPTEEETGASSGKRSRGRPRKYPVGSLQGPVESSRTQKTRSFTSKFPYFECLMTKSCVEKCFLLTIPKAFSQSHFPPAKLKVVLRNSAGKTWEVNCIYHAKRHSLSGGWSTFVRENSLKQGGTCRFELVEKNVMQVHVL* 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4874232 4875367 + Vvi3g505 Vvi3g505 784180

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g505 231 Pfam B3 DNA binding domain 5 82 IPR003340 GO:0003677
Vvi3g505 231 Pfam B3 DNA binding domain 141 223 IPR003340 GO:0003677
Vvi3g505 231 SUPERFAMILY DNA-binding pseudobarrel domain 5 83 IPR015300 -
Vvi3g505 231 ProSiteProfiles B3 DNA-binding domain profile. 1 82 IPR003340 GO:0003677
Vvi3g505 231 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 128 231 IPR044837 -
Vvi3g505 231 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 4 115 IPR044837 -
Vvi3g505 231 SUPERFAMILY DNA-binding pseudobarrel domain 134 230 IPR015300 -
Vvi3g505 231 CDD B3_DNA 5 79 IPR003340 GO:0003677
Vvi3g505 231 MobiDBLite consensus disorder prediction 87 130 - -
Vvi3g505 231 ProSiteProfiles B3 DNA-binding domain profile. 141 231 IPR003340 GO:0003677
Vvi3g505 231 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0723500 4 115 - -
Vvi3g505 231 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0723500 128 231 - -
Vvi3g505 231 Gene3D - 123 231 IPR015300 -
Vvi3g505 231 CDD B3_DNA 139 231 IPR003340 GO:0003677
Vvi3g505 231 SMART B3_2 141 228 IPR003340 GO:0003677
Vvi3g505 231 SMART B3_2 1 82 IPR003340 GO:0003677
Vvi3g505 231 Gene3D - 2 84 IPR015300 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g505 - - - vvi:100264028 463.766
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g505 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002878 1 9 2 0 2 1 1 1 1 2 0 1 2 2 2 1 1 0 1 1 2 2 2 2 2 2 2 3 1 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14664 PF02362 B3 2.80E-17 CL0405 Vvi TF