Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g506 ATGCCGGAGCAGGAAACACTTGACCATAGCCATTGTCGCCGGCCCAGTTCTCAGCCGACGAGGTCTTTGCTTTTCTACAAGCTCATTGTCTCATCCGTTCTACAGGCCAAGAGACTGAGGATCCCACAGAAGTTTGTCAAGAAATCTGGGGATCAACTTTCTGCTGTTACAACTCTTACTCTTCCCAATGGTGGTGTTTGGTATGTGGGTTTAACGAAAGCTGACAACAAGTTCTGGTTCTACCATGGTTGGCATGAATTTGTAGAATATTACTCTATCCATGTTGGGTACTTTTTAATCTTCAGATATGAAGGAAATTCGAATTTCAATGTCAACATATTTGACTTGACTGCTTCTGAGATAAACTATCCATCTAATAATCTTAGAAATTCTGAGAAAACCAGCCATGGCAAGCAATGTCCTGCATCTGATGGGGAAGAAATGAATGATGATGATGACTCTGTTGAAATTTTGGGTTCTGCTTCTCCTGTTTCTTTGAGAAGTAAAGTCTTTGATGAATGCATAGATCAGCAACCCCTTGGTAAAAATTACAATGAAAATTTGCATCTGGCAAAAGATGCTAATAGTTTACAAGTCACAATTCGGTCTAGCCGAGACATAGGCATTCAATTCAACAGCAGTGAGCTAACGAATTCTGAATGTAAAAGGTGGAGAGTTGTAACAATGGAGGAAAAGAAGAGGGCACTTCATGCCGCAGAAATGTTCCAGCCTAGTAATCCATTCTGCAGGGTTATCTTGCGACGATCCTATGTGCATGAGAGGTTCCTCTTGCATATGCCATCCAGGTTTGCAGAAAAGTATCTCAATGGGGTCTCAAAATTCATCAAACTTCAGACCTCTGATGGGAAACAATGGCATGTTCGATGCCTTTCTGGGGAGAGTCGAGTTAAATTAAGTAAGGGATGGACTGAATTTGTTAAGGACAATAATTTGGAGGAAGGCGATGTTTGTGTCTTTGAGCTCATCAATATGGAGGATGTTGTTCTGAAAGTTTCCATATTTCGTGTCCTTGATGATGCAAGAGTGGAGACTCAATCTTCAAACTGA 1068 41.2 MPEQETLDHSHCRRPSSQPTRSLLFYKLIVSSVLQAKRLRIPQKFVKKSGDQLSAVTTLTLPNGGVWYVGLTKADNKFWFYHGWHEFVEYYSIHVGYFLIFRYEGNSNFNVNIFDLTASEINYPSNNLRNSEKTSHGKQCPASDGEEMNDDDDSVEILGSASPVSLRSKVFDECIDQQPLGKNYNENLHLAKDANSLQVTIRSSRDIGIQFNSSELTNSECKRWRVVTMEEKKRALHAAEMFQPSNPFCRVILRRSYVHERFLLHMPSRFAEKYLNGVSKFIKLQTSDGKQWHVRCLSGESRVKLSKGWTEFVKDNNLEEGDVCVFELINMEDVVLKVSIFRVLDDARVETQSSN* 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4879759 4881735 + Vvi3g506 Vvi3g506 784181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g506 355 SUPERFAMILY DNA-binding pseudobarrel domain 23 116 IPR015300 -
Vvi3g506 355 CDD B3_DNA 247 342 IPR003340 GO:0003677
Vvi3g506 355 SMART B3_2 249 344 IPR003340 GO:0003677
Vvi3g506 355 SMART B3_2 25 117 IPR003340 GO:0003677
Vvi3g506 355 Gene3D - 19 118 IPR015300 -
Vvi3g506 355 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-LIKE 21 344 - -
Vvi3g506 355 ProSiteProfiles B3 DNA-binding domain profile. 24 117 IPR003340 GO:0003677
Vvi3g506 355 ProSiteProfiles B3 DNA-binding domain profile. 249 344 IPR003340 GO:0003677
Vvi3g506 355 Pfam B3 DNA binding domain 252 342 IPR003340 GO:0003677
Vvi3g506 355 Pfam B3 DNA binding domain 27 115 IPR003340 GO:0003677
Vvi3g506 355 CDD B3_DNA 23 115 IPR003340 GO:0003677
Vvi3g506 355 PANTHER B3 DOMAIN-CONTAINING 21 344 - -
Vvi3g506 355 MobiDBLite consensus disorder prediction 127 151 - -
Vvi3g506 355 Gene3D - 226 346 IPR015300 -
Vvi3g506 355 SUPERFAMILY DNA-binding pseudobarrel domain 243 343 IPR015300 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g506 - - - vvi:100264028 701.049
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g506 . . . . . . Bma05g00507 . . . Cma02g00430 Cma20g00883 Car02g00285 Car20g00761 . . . . . . . . . . . . . . . . . Cone12ag1121 Cone8ag1166 Cone3ag1121 . Lsi10g00600 . Chy11g00424 . Blo04g00496 Blo13g00560 . . Bpe15g00884 . Bma03g00530 . Sed01g0327 Cmo02g00432 Cmo20g00891 . . . . . Cpe05g01232 Bhi10g02065 Tan05g1371 Cmetu11g0349 . Hepe08g1052 . . Cla09g01731 Cam09g1826 Cec09g1885 Cco09g1978 . . Cre01g0683 . Csa02g01212 . Cme11g00493
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004511 1 0 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 6 1 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14665 PF02362 B3 2.20E-21 CL0405 Vvi TF