Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g507 ATGAAAATATCATACACAGCTGAAAATGGGTTTTTGATTTTTGGTTTGGGGGAAATAGACTTAGTAAGGATACGGAACATGAAAAATAGGACGAGACTCAAAAACCAAATCATGGTATCCAAACAGCCCTGTAATATGGGCCTTCAACACCAAAAAAGCGGTGGCCATGAATTCAGCTGGGATAGACTGCAAATCCCAACAGCTTTCGTAAAACACTTTAATGGCTTTGTCCCTGAAAAGGCCATCCTCAGAGATTCTGTTGGGAGAGTTTGGCATGTGGAGGTAGGCCAAATTGGAAAGAATGTGTATTTTCTGAAAGGTTGGCAGCAGTTTCTTACAGATAATCTAGTGGAAGAGGGCGACCTTTTTGTTTTCCAATATGATGGCAGTTATATATTTGATTTTAAATTATATGGGACAACTGGGTGTCAAAAGAAAGACTCTGAGGTTAATGTGGATGTCAACAAAAAGAAATTTTTTGTGAAGGGGGAGGAGGATGTTGAAGAAGTAGAAAGAAATGAAGAAGAAGAGGAGGAAGAAGAAGAGGAAGAAGAACCACAATCAAAATCTTCTAACAAGGGAGTGGTTGTATTCAAGCGTAAATATTCTGGCAGAGGTGGGTACAAACAAACTGCCATTAAAAAGACTAGAAGTGCATACAAAGAAACTTCTCATACCAAGAGCAAGTATAAAAAAGCTTGTACTGGCAATGTTGAGGTAGACAATGCTTTAGACTTCAAAAGTATTGTTAAACCTGAAAATCCTTGTTTCATAACAAAAATACGACCAGGAAGGAGGAGTAAATTGTATGTTCCTGTAGACATACTTAAAGACCATAACATTGCATTGCCTCCAAGAGTGTTGCTTTGTGACCCACATGGGAGATCGTGGCCTGGAGATGTTACTATCTGGAAGGATGGTCGGACATGGATTGGCGGGTGGAGAGCTTTCTGCAAGTGGAACCATGTAGGTGAAAATGACTCCTGCATTTGTGAATTTGTACAGGAAAGTGGGTGCCGGGGGGATCTCATTGTTGTTCACATCCATCGACGCATCCCAACAGCTTTTGTAGAGCACTTTAATGGCTTTATGCCTGAAAAGGCCATCCTTAGAGATTTTGTTGGGAGAGTTTGGCATGTGGAGGTAGGCCCAATTGGAAAGAATGTGTACTTTCTGAATGGTTGGCAGCAATTTCTTACAGAGAATTCTGTAGAAGAGGGAGACTTTTTGGTTTTTCGATACGCTGGAAATTGCATATTTGATTTTAAATTGTTGGGGAGAACTGAGTGTGAAAAGAAAGACACTAAGGTGGTTGATATGGATATCTACAAAAAGGATTTTTGTGTGAAGGAGAAGGATGTGGAAGAAGCAGAAGGAGAAGAAGAGGAAGAGGAAGAGGAAGAGAAGGAGGAGGAAGAGGAGGAAGAGGAAGAAGATGAAGAGGAGGAGAAAATGGAGGAAGATGATGAAGAAGAGGAAAGAAAACTACAACCAAAATCTCCTAACATGAAAATGGTTGTAAAGCATAAATATTCTAGCAGAGGCTGCCCAGCAATTGATAGAAAAAATTATTGTGGTTACAAACAAAGTGCTGTAAAAAAGACCAGAGGTGTGTACAAAGAAACTGCCCATACCAAGAGCAACTATAAAAAGGCCTCTTCATCCCAGGCTGAGTATGTTCCAGCGGACATACTTCAAGACTTCAACATTGCATTACCTCCCAGGGTGTTGCTTCGTGACCTGCATGGGAGATCGTGGCCTGGAGATGTTTCTGTCTGGAAGGATGGTCGAACATGGATTGGAGGATGGCAAGCTTTCTGCAAGTCGAACCATTTGGATGAAAATGACTGCTGCATTTATGAATTTGTACTGGAAAATGGCCACCATGGAGATTTCATTGTTCTTCACATTCACCGGGCACAACCCAAGATATCACCCAGAGGGTTTTTTTTGTTGCAGAACGAGATGAGTTCACCACAAGAAGAATGCCCTGAGTTCTTCAAGGTGTGTCTCCCTGAGTGCAGCTCTGACAAACTGCTTATCCCAACTGCTTTCAGAGAGCATTTTAATGGATTTGTGCCTCACAAGGCCATCCTCAGAGATCCTGTTGGGAGAGTTTGGCAAGTGGAGTTAAGCAAAATAGGAAAGGATGTGTACTTTCAGAAGGGTTGGCAGAAATTTGTTACAGATAATTTTGTAGAAATGGAAGATTTTCTTGTTTTCCGATATGATGGTGGTTATATATTTGATTTTAAATTATTTCGAAATACTGGGTGTGAGAAGAAAGGCTCTGAGGAGATCAATGTGGGCATCTACAAAAGGTGTTTTTTTGGGTACAAACAAACTGCCATTAAAAAGAGCAGAGTTGCATCCGAAGAAAGCAACTGCACCAAGAGAAAGTATAAGGAAGCTTCTGCTGTCCAGGTTGAGGAAAACATTGCTTTTGAAATAGAAAGTATTGTTAATCCCCAAAATCCTTATTTCGAAACTAAAGTAAGACCAGCGAGGAGGAGCAAATTGTATGTTCCATTAGATGTGCTAAGAGACCATAATATTAAATTACCTCCAAAGATGACCCTTCGTGACCCTCTTGGGAGATTGTGGATTGGAAAGGTTGCTGTCTGGAAGGATGGTCGGACATGGATTGGGTGGAAACCATTCTGCAAGTGGAACAATGTGGGTGAAAATGACACCTGCATTTGTGAATTTGTACAGGAAAGTGGCCATGAGGGGTATCTCCTTGTTGTTCACATTCTTCGGGCACAGCCTAGCCGGAGGGCACCCAAATGCAAATGCCGAGCTGAAAGTGGTGAAGAGATGGCTGAGCCAATGGGACAATCTTTCTCTAGAAATAAGCTCATCTCATCAGCTTGTCAGCCAACCATCTTGCTATCACCTTATCCAACTTCTCCCATCTCACTTCTTACAAAGTGTCATTTGCTTCCCTCTCATCATCTCTGTACTTCGATATTTGAACAAAGCTCTTCAACCTCATCACATCAGATTGTGGGGAAGATAGCAATGGCAACAGCTTCTGCCACACTTTCCCCCTCCACATTTTCTGCTGCTGCCATTGCGGGCTTAGGCCGCACCTCCCAGAGGAGAAAAACCAATGTACACTTCATAGGGGGACTGAACTCCTTTGATGGACTGAAAGCTTACAACAGTGTGGCCTCTTTAGGCCTTCCTGTTTGTACTGAGCAGTCCTTTGCAAAGATTGTGGGCTCACTGAAATATTCAGGATTGCGGCAATCATGA 3258 42.08 MKISYTAENGFLIFGLGEIDLVRIRNMKNRTRLKNQIMVSKQPCNMGLQHQKSGGHEFSWDRLQIPTAFVKHFNGFVPEKAILRDSVGRVWHVEVGQIGKNVYFLKGWQQFLTDNLVEEGDLFVFQYDGSYIFDFKLYGTTGCQKKDSEVNVDVNKKKFFVKGEEDVEEVERNEEEEEEEEEEEEPQSKSSNKGVVVFKRKYSGRGGYKQTAIKKTRSAYKETSHTKSKYKKACTGNVEVDNALDFKSIVKPENPCFITKIRPGRRSKLYVPVDILKDHNIALPPRVLLCDPHGRSWPGDVTIWKDGRTWIGGWRAFCKWNHVGENDSCICEFVQESGCRGDLIVVHIHRRIPTAFVEHFNGFMPEKAILRDFVGRVWHVEVGPIGKNVYFLNGWQQFLTENSVEEGDFLVFRYAGNCIFDFKLLGRTECEKKDTKVVDMDIYKKDFCVKEKDVEEAEGEEEEEEEEEKEEEEEEEEEDEEEEKMEEDDEEEERKLQPKSPNMKMVVKHKYSSRGCPAIDRKNYCGYKQSAVKKTRGVYKETAHTKSNYKKASSSQAEYVPADILQDFNIALPPRVLLRDLHGRSWPGDVSVWKDGRTWIGGWQAFCKSNHLDENDCCIYEFVLENGHHGDFIVLHIHRAQPKISPRGFFLLQNEMSSPQEECPEFFKVCLPECSSDKLLIPTAFREHFNGFVPHKAILRDPVGRVWQVELSKIGKDVYFQKGWQKFVTDNFVEMEDFLVFRYDGGYIFDFKLFRNTGCEKKGSEEINVGIYKRCFFGYKQTAIKKSRVASEESNCTKRKYKEASAVQVEENIAFEIESIVNPQNPYFETKVRPARRSKLYVPLDVLRDHNIKLPPKMTLRDPLGRLWIGKVAVWKDGRTWIGWKPFCKWNNVGENDTCICEFVQESGHEGYLLVVHILRAQPSRRAPKCKCRAESGEEMAEPMGQSFSRNKLISSACQPTILLSPYPTSPISLLTKCHLLPSHHLCTSIFEQSSSTSSHQIVGKIAMATASATLSPSTFSAAAIAGLGRTSQRRKTNVHFIGGLNSFDGLKAYNSVASLGLPVCTEQSFAKIVGSLKYSGLRQS* 1086
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4887974 4921315 + Vvi3g507 Vvi3g507 784182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g507 1085 ProSiteProfiles B3 DNA-binding domain profile. 352 428 IPR003340 GO:0003677
Vvi3g507 1085 MobiDBLite consensus disorder prediction 167 192 - -
Vvi3g507 1085 ProSiteProfiles B3 DNA-binding domain profile. 254 351 IPR003340 GO:0003677
Vvi3g507 1085 CDD B3_DNA 826 920 IPR003340 GO:0003677
Vvi3g507 1085 ProSiteProfiles B3 DNA-binding domain profile. 543 641 IPR003340 GO:0003677
Vvi3g507 1085 SMART B3_2 343 428 IPR003340 GO:0003677
Vvi3g507 1085 SMART B3_2 48 141 IPR003340 GO:0003677
Vvi3g507 1085 SMART B3_2 666 757 IPR003340 GO:0003677
Vvi3g507 1085 SMART B3_2 257 342 IPR003340 GO:0003677
Vvi3g507 1085 SMART B3_2 545 641 IPR003340 GO:0003677
Vvi3g507 1085 SMART B3_2 828 922 IPR003340 GO:0003677
Vvi3g507 1085 Gene3D - 806 923 IPR015300 -
Vvi3g507 1085 Gene3D - 237 347 IPR015300 -
Vvi3g507 1085 Gene3D - 480 641 IPR015300 -
Vvi3g507 1085 Gene3D - 50 143 IPR015300 -
Vvi3g507 1085 Gene3D - 348 430 IPR015300 -
Vvi3g507 1085 Gene3D - 657 759 IPR015300 -
Vvi3g507 1085 SUPERFAMILY DNA-binding pseudobarrel domain 660 759 IPR015300 -
Vvi3g507 1085 Coils Coil 450 495 - -
Vvi3g507 1085 MobiDBLite consensus disorder prediction 168 185 - -
Vvi3g507 1085 SUPERFAMILY DNA-binding pseudobarrel domain 251 350 IPR015300 -
Vvi3g507 1085 SUPERFAMILY DNA-binding pseudobarrel domain 348 430 IPR015300 -
Vvi3g507 1085 MobiDBLite consensus disorder prediction 455 490 - -
Vvi3g507 1085 SUPERFAMILY DNA-binding pseudobarrel domain 821 921 IPR015300 -
Vvi3g507 1085 Coils Coil 160 187 - -
Vvi3g507 1085 CDD B3_DNA 351 414 IPR003340 GO:0003677
Vvi3g507 1085 SUPERFAMILY DNA-binding pseudobarrel domain 58 143 IPR015300 -
Vvi3g507 1085 Pfam B3 DNA binding domain 837 909 IPR003340 GO:0003677
Vvi3g507 1085 Pfam B3 DNA binding domain 572 626 IPR003340 GO:0003677
Vvi3g507 1085 Pfam B3 DNA binding domain 57 130 IPR003340 GO:0003677
Vvi3g507 1085 Pfam B3 DNA binding domain 667 755 IPR003340 GO:0003677
Vvi3g507 1085 Pfam B3 DNA binding domain 264 338 IPR003340 GO:0003677
Vvi3g507 1085 Pfam B3 DNA binding domain 350 420 IPR003340 GO:0003677
Vvi3g507 1085 PANTHER B3 DOMAIN-CONTAINING 52 203 - -
Vvi3g507 1085 PANTHER B3 DOMAIN-CONTAINING 351 642 - -
Vvi3g507 1085 PANTHER B3 DOMAIN-CONTAINING 790 1021 - -
Vvi3g507 1085 PANTHER B3 DOMAIN-CONTAINING 251 347 - -
Vvi3g507 1085 PANTHER B3 DOMAIN-CONTAINING 661 776 - -
Vvi3g507 1085 SUPERFAMILY DNA-binding pseudobarrel domain 556 628 IPR015300 -
Vvi3g507 1085 CDD B3_DNA 664 755 IPR003340 GO:0003677
Vvi3g507 1085 CDD B3_DNA 255 350 IPR003340 GO:0003677
Vvi3g507 1085 ProSiteProfiles B3 DNA-binding domain profile. 825 922 IPR003340 GO:0003677
Vvi3g507 1085 CDD B3_DNA 576 639 IPR003340 GO:0003677
Vvi3g507 1085 CDD B3_DNA 61 130 IPR003340 GO:0003677
Vvi3g507 1085 ProSiteProfiles B3 DNA-binding domain profile. 48 141 IPR003340 GO:0003677
Vvi3g507 1085 MobiDBLite consensus disorder prediction 453 504 - -
Vvi3g507 1085 ProSiteProfiles B3 DNA-binding domain profile. 664 757 IPR003340 GO:0003677
Vvi3g507 1085 PANTHER B3 DOMAIN-CONTAINING PROTEIN LOC_OS12G40080 251 347 - -
Vvi3g507 1085 PANTHER B3 DOMAIN-CONTAINING PROTEIN LOC_OS12G40080 52 203 - -
Vvi3g507 1085 PANTHER B3 DOMAIN-CONTAINING PROTEIN LOC_OS12G40080 790 1021 - -
Vvi3g507 1085 PANTHER B3 DOMAIN-CONTAINING PROTEIN LOC_OS12G40080 661 776 - -
Vvi3g507 1085 PANTHER B3 DOMAIN-CONTAINING PROTEIN LOC_OS12G40080 351 642 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g507 - - - vvi:100853231 524.628
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g507 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa07g00811 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002878 1 9 2 0 2 1 1 1 1 2 0 1 2 2 2 1 1 0 1 1 2 2 2 2 2 2 2 3 1 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14666 PF02362 B3 1.10E-07 CL0405 Vvi TF