Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g51 ATGCCGGCCCTGGCTTGTTGCGTAGATGCTGCTGTTGCACCTCCCGGCTACGCCTTTGCCGGGGATAGCTCTCTTCCCGCGCCGGTGCCATTCGCCGGCGATCCTCTGGCGACAAACGACGCTGCAGCTCTCCCGACCGGCGAACATTCTCATTGGTCCCCATCCCTCTCGGCGGATTTGTATAGGATCGACGGTTGGGGGGCGCCGTACTTCTCCGTTAACACCTCCGGCAACATTTCTTCTCTGCATTCGGGTCGGCTTTCCGGTTTGGCCTCGAAGCTGCTTGATCTGGTGATTAATCTAAGCCAGAAGCTTTCCGTGCATCCGGTGATTGGTGTCCGAGCCAAGCTGAGGACTAAGCACGCGGGCCATTTTGGGTCCACGTCTGGCGAGAAAGGGAAGTTTGGGTTGACTACGATACAGATTTTGCGAGTAGTAAGAAAGCTTGAACAAGCAGGAATGCTTGATTCTCTGCAATTACTGCATTTCCACATCGGATCTCAGATTCCTTCTACAGACTTGCTCGCAGATGGGGTCAGTGAAGCTGCTCAGATTTACTGTGAATTGGTCCGTCTCGGTGCCCATATGCGAGTCATTGACATTGGAGGGGGTCTCGGTATTGATTATGATGGATCGAAGTCGAGTGAGTCTGATATTTCTGTTGGTTATGGGCTTGAAGAGTATGCTATGGCAGTAGTTCGAGCTGTCCAGCATGTATGTGATCGCAAGTCAGTGAAACACCCTGTGATTTGCAGTGAAAGTGGCCGGGCTTTAGTCTCTCACCATTCAATTTTGATCTTTGAGGCTGTTTCGGCAAGTGTACATGATTCACCTGCTACTTCACTCAGTTTACAGCGCTTTGTGGAGGGACTTTCTGAGGAAGCCCGTGTTGATTACCAGAATCTGGCTGCTGCTGCAGTTAGTATTGAACAGCTTGCTGACGTTGATGGGCTGTGTGACTTGGTTTCCAAGGAGGTTGGTGCCACTGATCCAGTGCGCACTTACCATGTGAATTTATCAGTCTTCACATGTATTCCTGATTTCTGGGGTATTGGGCAGCTGTTCCCTATAGTCCCCATTCACCGACTCGACCAGAGGCCTGGGGCGAGGGGGATTTTATCGGATTTGACCTGTGACAGTGATGGGAAGATTGATAAGTTCATTGGCGGTGATACTACTTGGGGATGTTCTTGGGCGGGGCTTACGAGGAGGCGCTCGGTGGTTTGCACAATCTGTTTGGTGGCCCGAGTGTTCATGAGCCTGAGCTCATGTTCGAGACGCTTAAGCACCGCGCTGAGGAACAACTACAATCGTGCTGCTGATTCTGCTGCTGGGGATGATGACCATTGGTCTTACTGCTTTGCTTGA 1368 51.68 MPALACCVDAAVAPPGYAFAGDSSLPAPVPFAGDPLATNDAAALPTGEHSHWSPSLSADLYRIDGWGAPYFSVNTSGNISSLHSGRLSGLASKLLDLVINLSQKLSVHPVIGVRAKLRTKHAGHFGSTSGEKGKFGLTTIQILRVVRKLEQAGMLDSLQLLHFHIGSQIPSTDLLADGVSEAAQIYCELVRLGAHMRVIDIGGGLGIDYDGSKSSESDISVGYGLEEYAMAVVRAVQHVCDRKSVKHPVICSESGRALVSHHSILIFEAVSASVHDSPATSLSLQRFVEGLSEEARVDYQNLAAAAVSIEQLADVDGLCDLVSKEVGATDPVRTYHVNLSVFTCIPDFWGIGQLFPIVPIHRLDQRPGARGILSDLTCDSDGKIDKFIGGDTTWGCSWAGLTRRRSVVCTICLVARVFMSLSSCSRRLSTALRNNYNRAADSAAGDDDHWSYCFA* 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 644717 647153 - Vvi3g51 Vvi3g51 783726

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g51 455 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 332 392 IPR009006 GO:0003824
Vvi3g51 455 PANTHER ARGININE DECARBOXYLASE 1 81 - -
Vvi3g51 455 PANTHER ARGININE DECARBOXYLASE 94 307 - -
Vvi3g51 455 PANTHER ARGININE DECARBOXYLASE 308 394 - -
Vvi3g51 455 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 108 260 IPR022644 GO:0003824
Vvi3g51 455 PRINTS Arginine decarboxylase signature 88 109 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vvi3g51 455 PRINTS Arginine decarboxylase signature 112 134 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vvi3g51 455 PRINTS Arginine decarboxylase signature 240 257 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vvi3g51 455 PRINTS Arginine decarboxylase signature 338 359 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vvi3g51 455 PRINTS Arginine decarboxylase signature 363 388 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vvi3g51 455 SUPERFAMILY PLP-binding barrel 94 262 IPR029066 -
Vvi3g51 455 PANTHER ARGININE DECARBOXYLASE 94 307 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vvi3g51 455 PANTHER ARGININE DECARBOXYLASE 308 394 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vvi3g51 455 PANTHER ARGININE DECARBOXYLASE 1 81 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vvi3g51 455 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 155 168 IPR000183 GO:0003824
Vvi3g51 455 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 250 269 IPR000183 GO:0003824
Vvi3g51 455 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 193 206 IPR022657 -
Vvi3g51 455 Gene3D Alanine racemase 95 262 IPR029066 -
Vvi3g51 455 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 263 276 IPR009006 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g51 K01583 E4.1.1.19; arginine decarboxylase [EC:4.1.1.19] - vvi:100233080 565.074
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g51 Blo02g00651 Blo15g00662 Bda06g00971 Bda08g00964 Bpe07g00493 . . Bma12g00535 . . Cma02g00359 Cma20g00804 Car02g00226 Car20g00688 . . . . . . . . . . . . . . . . . Cone12ag1192 Cone8ag1240 . . Lsi10g00424 . Chy11g00329 . . . . . . . . . Sed05g3557 Cmo02g00362 Cmo20g00812 . . . . Cpe16g00280 Cpe05g01297 Bhi10g01930 Tan05g1229 Cmetu11g0754 . Hepe08g0965 . . . . . . . . . . Csa02g01315 . Cme11g00178
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004369 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 4 1 1 1 1 2 1 43