Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g510 ATGATGTCAAGATCGTATACCAATCTTTTAGATTTAGCTACTGGGAATTTTCCGGCAATCGGTCGAGAACGGAAGCGGCTTCCGAGGGTAATGACGGTTCCGGGCAATGTGTATGAACTTGATGATGATCAGGCTAATAGTGTGTCGTCTGATAACCCCTCTTCAGTTGCTCAAGATCGGTTGATTATAGTGGCAAACCAGTTGCCTGTGAAAGCTAACCGAAGAGCAGATGATAGAGGCTGGGTTTTTAGTTGGAATGAAGACTCATTGCTTCTGCAACTTAAGGAGGAGGAAGTATCCCAGATTCTGTTGGAGACATTCAAATGTGTCCCTACTTTTCTGCCTCATGATGTTTTAGAGAAATTCTATCATGGATTCTGCAAGAAGTTGTTATGGCCGCTTTTCCATTACATGTTGCCATTTTCAGCTGATCATGGAGGTCGGTTTGATCGGTCTATGTGGGAAGCATATGTGTGGGCAAATAAGTTATTCTCACAAAAGGTTATTGAGGCGATAAACCCAGATGATGATTATGTTTGGATTCATGATTACCATTTGATGGTATTGCCAACTTTCTTGAGGAGGCACTTTAACCAGTTAAGAATGGGGTTTTTTCTTCATAGTCCATTTCCATCTTCAGAGATCTACAGGACTCTTCCTGTCAGAGAAGAAATTCTTAAGGCTTTGCTTAACTCAGACCTTATTGGTTTCCACACATTTGATTATGCTCGGCATTTCCTTTCTTGTTGCAGTCGGATGTTGGGTTTGGAGTATCAGTCAAAGAGGGGCTATATAGGGTTGGAATATTATGGAAGGACTGTGGGGATCAAGATTATGCCTGTTGGGATTCATATGGGCCGGATTGCTTCAGTGATGAAGCTTGCAGATAAGGAGAAGAAGCTATTGGCAATGGAACAGTTGCTTCAGCAACACTCAAAGTGGCAAGGAAAGACCGTGTTGGTTCAGATTGCAAACCCTGCAAGAGGTAAAGGAGCAGATTTAGAGGAAATACAAGCTGAAATAAGGGAAAGCTGCAGAAGAATCAATGAAGAATTTGGGGAGCCCGGGTATGAACCAATAGTTTTTGTTGACAGACCAGTTTCAATCAGTGAGAGAATTGCCTATTACAGTATTGCTGAGTTGCTATCAGAATTTATTGGATGCTCTCCTTCACTTAGTGGGGCTATCTGTGTGAATCCATGGAATGTCGAAGCAACTGCTGAGGCAATGAATGAAGCTATTTCAATGTCTCAATCAGAGCAACTCCTGCGACATGAGAAGCATTTTCGGTATGTTAGCACCCATGATGTGGCTTATTGGTCACGAAGCTTCTTGCAAGATATGGAGAGAACCTGCTCAGAGCTCTTTAGGAGAAGATGCTGGGGAATTGGTTTAAAGGCTATTGTTTCGGCCTACTGTAGGGCTAAGAGTAGGGCCATACTGTTGGACTATGATGGCACTGTGATGCCCCAAAATTCCATCAACAAGGCTCCAAGTCAGGAGGTTATTTCAATTCTAAACACACTTTGCTGGGACAAGAAAAATATAGTTTTTATTGTCAGTGGAAGAGGAAGGGATAACTTAAGCCAGTGGTTTTCCCCCTGCAGGAAGCTTGGACTTGCAGCAGAAGCAATCTTAATGGAAGGAATAAATGAAGAGAATGAACGAGAAAATATTGATAATTTGGCAGAGAGGTGCGTCCGGACACCTCGTCCGGACGCCTTTTGCAGGTAG 1734 42.96 MMSRSYTNLLDLATGNFPAIGRERKRLPRVMTVPGNVYELDDDQANSVSSDNPSSVAQDRLIIVANQLPVKANRRADDRGWVFSWNEDSLLLQLKEEEVSQILLETFKCVPTFLPHDVLEKFYHGFCKKLLWPLFHYMLPFSADHGGRFDRSMWEAYVWANKLFSQKVIEAINPDDDYVWIHDYHLMVLPTFLRRHFNQLRMGFFLHSPFPSSEIYRTLPVREEILKALLNSDLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGLEYYGRTVGIKIMPVGIHMGRIASVMKLADKEKKLLAMEQLLQQHSKWQGKTVLVQIANPARGKGADLEEIQAEIRESCRRINEEFGEPGYEPIVFVDRPVSISERIAYYSIAELLSEFIGCSPSLSGAICVNPWNVEATAEAMNEAISMSQSEQLLRHEKHFRYVSTHDVAYWSRSFLQDMERTCSELFRRRCWGIGLKAIVSAYCRAKSRAILLDYDGTVMPQNSINKAPSQEVISILNTLCWDKKNIVFIVSGRGRDNLSQWFSPCRKLGLAAEAILMEGINEENERENIDNLAERCVRTPRPDAFCR* 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4943034 4950015 - Vvi3g510 Vvi3g510 784185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g510 577 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 96 IPR001830 GO:0003824|GO:0005992
Vvi3g510 577 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 382 558 IPR001830 GO:0003824|GO:0005992
Vvi3g510 577 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 452 - -
Vvi3g510 577 CDD GT20_TPS 60 449 IPR001830 GO:0003824|GO:0005992
Vvi3g510 577 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 97 300 - -
Vvi3g510 577 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 300 380 - -
Vvi3g510 577 Gene3D Glycogen Phosphorylase B; 382 434 - -
Vvi3g510 577 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 382 558 - -
Vvi3g510 577 Gene3D Glycogen Phosphorylase B; 52 293 - -
Vvi3g510 577 Gene3D - 477 568 IPR023214 -
Vvi3g510 577 Gene3D Glycogen Phosphorylase B; 294 381 - -
Vvi3g510 577 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 300 380 IPR001830 GO:0003824|GO:0005992
Vvi3g510 577 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 97 300 IPR001830 GO:0003824|GO:0005992
Vvi3g510 577 Pfam Glycosyltransferase family 20 298 381 IPR001830 GO:0003824|GO:0005992
Vvi3g510 577 Pfam Glycosyltransferase family 20 79 293 IPR001830 GO:0003824|GO:0005992
Vvi3g510 577 Pfam Trehalose-phosphatase 481 543 IPR003337 GO:0003824|GO:0005992
Vvi3g510 577 SUPERFAMILY HAD-like 478 543 IPR036412 -
Vvi3g510 577 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 1 96 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g510 K16055 - vvi:100253824 1073.15