Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g52 ATGTCTACATTCAGCGGCGATGAAACGGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTACCAGTTGTTATGGCTGGAGTTTTAGGTATTTACGGGCTTATCATTGCTGTTATCATCAGTACTGGGATTAACCCTAAGGCCAAATCGTACTACCTTTTCGATGGCTATGCGCATCTCTCGTCGGGTTTGGCGTGTGGTCTGGCCGGGCTCTCGGCCGGAATGGCAATCGGGATTGTTGGCGATGCCGGTGTCAGGGCTAATGCGCAGCAGCCTAAACTTTTTGTTGGTATGATCCTCATTCTCATCTTTGCTGAAGCACTGGCCCTATACGGCCTTATTGTTGGCATTATCTTGTCATCCCGAGCTGGCCAGTCCAGAGCAGAATAA 495 52.93 MSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE* 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 661990 664840 - Vvi3g52 Vvi3g52 783727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g52 164 CDD ATP-synt_Vo_c_ATP6C_rpt2 88 155 - -
Vvi3g52 164 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 12 120 IPR011555 GO:0033179|GO:0046961|GO:1902600
Vvi3g52 164 CDD ATP-synt_Vo_c_ATP6C_rpt1 12 79 - -
Vvi3g52 164 SUPERFAMILY F1F0 ATP synthase subunit C 12 76 IPR035921 -
Vvi3g52 164 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 2 164 - -
Vvi3g52 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vvi3g52 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 55 79 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vvi3g52 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 106 132 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vvi3g52 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 133 156 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vvi3g52 164 SUPERFAMILY F1F0 ATP synthase subunit C 86 155 IPR035921 -
Vvi3g52 164 Gene3D - 10 161 IPR035921 -
Vvi3g52 164 Pfam ATP synthase subunit C 16 75 IPR002379 GO:0015078|GO:0033177|GO:1902600
Vvi3g52 164 Pfam ATP synthase subunit C 96 154 IPR002379 GO:0015078|GO:0033177|GO:1902600
Vvi3g52 164 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 2 164 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g52 Vvi18g1050 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g52 K02155 - ath:AT4G34720 286.96