Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g526 ATGGCTGGGTTTCTGAGAAAACTTCTGCCTACTCTGCCTTCAAACCATGATGACGATGATAATCATCATAGTATGGAGTATTCATTTGCTATGGAGTATCATGGGCCTCCGGTCACTTATGATGTGCCTCTCGCAGTTCCTGTTGACATCGACCAAGTCCCTACTGCTGCTGCAGTTGTCTCAGCCTCTTTGGTTGATAACTCGTCGGTGCCGGTTATCCAACCAATTGTAATGGGTAAGCCTTTAAGCAAGAAGTTGGTGGACAAGTTAAAATCAGGCTCTGAAATGACTGCTTTGGGGGAACCTGTCGGCTTGAGTGCAAGAGGTAGTTCAGGTGCAGTAGGTTCCTTAAATGGTGATGAGAGTGCGCCCAAGTTATTAGATGCAATTAGAAGCTCCGGCAGATTTGGATTTTCCAAAATCCATAAAGATTCTTATGAGTTATTGGGAAGTTCAGACATGTTGCAGTTATCCAATGATTGTAAGGATGGTGGAGGCTTTGAAGATTATTTAAGCCATGTCAGTAGCGATTCCAGTGAATCGGGTGTGAGTTCAGAGGTTCTGTCCTCTGAGGATTCCAAAACAGAAAAACCTCGCCATGTCAAAGAACCGTCAAGTGTCACTTTCCGTGATCCTGAATCATATGACATTTTTCAAGAGGAATCCGATCATGCTGAGGCCAGAAATATCCATAGAAGGCGAGCTCCTGAAAGGAATGTGAAGAAAGGATTGTGCTATAGATGCTTGAAAGGAAATCGGTTCACAGAAAAGGAGGTATGCATTGTTTGCAGCGCAAAATACTGTGTTAGTTGTGTGCTGAGAGCAATGGGGTCAATGCCAGAAGGAAGAAAATGTGTTACTTGTATTGGTCTCCCAATTGAAGAGTCAAGGCGTAGGACCCTGGGGAAATGCTCTCAAATGCTCAAGCGATTGCTAAGTGACTTGGAAATAGAACTGATAATGCGTTATGAGCTACTCTGTGAAGTGAATCAGCTGCCACATGAACTTGTTTGTGTGAATGGCGAGCCTCTTTCTCAAGAAGAGATGGTTTTTTTGAAGAGCTGTCCAAAGCCGCCGAAAAAGCTAAAACCCGGAAGATATTGGTATGATAAAGTATCTGGTCTTTGGGGGAAGGAAGGACACAGGCCTTGTCAGATTATTAGCCCCCAGTTGAATGTTGGGGGTCAAATCAAGCGAAATGCTAGCAATGGAAATACAAAAATATTGGTAAATTCTCGGGAGATTACTGAAGTGGAGCACTGGATGATGCATGTGGCAGGAATCCGATGTGTAGGAAATATTAGCCTCTGGTTGAGTGCAGATGGAACCTATCAGGAAGAGGGACAGAAGAACATGATAGATCCAATAGGGAACAAGTCTGGAGTGAGGCTACTCTGTGCTGTCTTCTCTTTACCAATTCTTCCTGATTCTGCAAATCCTTCTGGGGGTGAAGTAAATGATCCTGTCAATGAGGTTGGTCTGAACCGCCTTGAGCAGAAAGCATCTCATAAACTTTTCCTCATTGGTCCTAATAGATCTGGGACAAGCACTATATTTAAACAGGCCAAGCTTCTATATAATGTTCCTTTCTCGGAAGATGAGCGTCAAAATATTAAGTTCATGATCCAGACCAACTTGTATTGCTATCTTGGTATATTGCTTGAGGGACGTGAACGATTTGAAGAAGAAATTTTGACTGAAATGCAGAAAAGACAGTCTGTTGATGAGCCTGGTCCTTCAGGGAACACTGGCTTGACTCAGGATAAAACAATCTATTCCATTGGCCCTAGGCTGAAAGCATTCTCTGATTGGCTTCTCCAAGTTATGGTGTCAGGTAATTTAGAAGTCATTTTCCCTGCTGCTACTCGTGAATATGCACCATTAGTTGAGGAGCTGTGGAAAGATGCAGCAATTCAAGCCACATACAACCGAAGAAGTGAACTAAAAATGCTACCCAGAGTTGCTAGTTATTTCTTAGATCAGTCTGTTGAGGTTTCAAAGGTAGATTATGAGCCCTCAGATGTGGATATCTTGTATGCCGAGGGTATTACTTCATCAAATGGGCTTGCTTGTACAGAATTTTCATTAGAGGATGTCGACCTGGACCCTCATAATCAGCCCGGTACATTGCCAAGTCGCAGGTTCGAACTCATCAGAGTGCACCCAAAAAACCTTGGGGACAACTGCAAGTGGTTGGAGATGTTTGAAGATGTTGGGATTGTCTTATTTTGTGTTTCCTTATCAGACTACGATGAATTGTCTGATGGCCTTAATGGGTTCTCTAGGAACAAGATGCTGGAGAGCAAGAAGCTCTTTGAAAGAGTAGTCACTCATCCTAACTTCGAGCACAAGGACTTCCTCCTGATACTCAACAAGTTCGACCTCTTAGAGGAAAAAATTGATCTGTCTCCTCTCACCAAATGTGAGTGGTTCCATGACTTTACTCCGGTCGTCAGTCACAACTACAACAGCCGGAGTAGTATAAGTAACACTCATTCATTGGCTCAAATTGCCTTCCACTACATCGCCCTAAAGTTCAAGACACTGTTCTATTCCCTTACTGGACGCAAGTTGTATGTTTCATCAGTCACAGGATTGGAGCCTGATACTGTTGGTGAAGCTCTCACATATGCAGGGACGATTCTGAAGTGGGATGAGGAGAAGAAACCCAACTACGTTCTCTGTGACTCTTCCTACAGCCTTGACACCAGCACCTCATGA 2721 43.62 MAGFLRKLLPTLPSNHDDDDNHHSMEYSFAMEYHGPPVTYDVPLAVPVDIDQVPTAAAVVSASLVDNSSVPVIQPIVMGKPLSKKLVDKLKSGSEMTALGEPVGLSARGSSGAVGSLNGDESAPKLLDAIRSSGRFGFSKIHKDSYELLGSSDMLQLSNDCKDGGGFEDYLSHVSSDSSESGVSSEVLSSEDSKTEKPRHVKEPSSVTFRDPESYDIFQEESDHAEARNIHRRRAPERNVKKGLCYRCLKGNRFTEKEVCIVCSAKYCVSCVLRAMGSMPEGRKCVTCIGLPIEESRRRTLGKCSQMLKRLLSDLEIELIMRYELLCEVNQLPHELVCVNGEPLSQEEMVFLKSCPKPPKKLKPGRYWYDKVSGLWGKEGHRPCQIISPQLNVGGQIKRNASNGNTKILVNSREITEVEHWMMHVAGIRCVGNISLWLSADGTYQEEGQKNMIDPIGNKSGVRLLCAVFSLPILPDSANPSGGEVNDPVNEVGLNRLEQKASHKLFLIGPNRSGTSTIFKQAKLLYNVPFSEDERQNIKFMIQTNLYCYLGILLEGRERFEEEILTEMQKRQSVDEPGPSGNTGLTQDKTIYSIGPRLKAFSDWLLQVMVSGNLEVIFPAATREYAPLVEELWKDAAIQATYNRRSELKMLPRVASYFLDQSVEVSKVDYEPSDVDILYAEGITSSNGLACTEFSLEDVDLDPHNQPGTLPSRRFELIRVHPKNLGDNCKWLEMFEDVGIVLFCVSLSDYDELSDGLNGFSRNKMLESKKLFERVVTHPNFEHKDFLLILNKFDLLEEKIDLSPLTKCEWFHDFTPVVSHNYNSRSSISNTHSLAQIAFHYIALKFKTLFYSLTGRKLYVSSVTGLEPDTVGEALTYAGTILKWDEEKKPNYVLCDSSYSLDTSTS* 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5114313 5120632 - Vvi3g526 Vvi3g526 784201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g526 906 MobiDBLite consensus disorder prediction 568 587 - -
Vvi3g526 906 MobiDBLite consensus disorder prediction 573 587 - -
Vvi3g526 906 SUPERFAMILY Transducin (alpha subunit), insertion domain 530 680 IPR011025 GO:0007165
Vvi3g526 906 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 14 904 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi3g526 906 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 2 14 904 - -
Vvi3g526 906 MobiDBLite consensus disorder prediction 190 208 - -
Vvi3g526 906 SMART galpha_1 483 866 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi3g526 906 Gene3D - 678 890 IPR027417 -
Vvi3g526 906 MobiDBLite consensus disorder prediction 173 208 - -
Vvi3g526 906 Gene3D - 531 677 IPR011025 GO:0007165
Vvi3g526 906 PRINTS Alpha G protein (transducin) signature 504 519 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi3g526 906 PRINTS Alpha G protein (transducin) signature 738 766 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi3g526 906 PRINTS Alpha G protein (transducin) signature 786 795 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi3g526 906 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 500 884 IPR027417 -
Vvi3g526 906 Pfam G-protein alpha subunit 495 872 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi3g526 906 ProSiteProfiles G-alpha domain profile. 501 893 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi3g526 906 MobiDBLite consensus disorder prediction 173 189 - -
Vvi3g526 906 CDD G-alpha 503 860 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g526 - - - vvi:100243480 1759.58
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g526 . Blo15g00719 . . Bpe07g00403 . . Bma12g00482 . . Cma02g00427 Cma20g00879 Car02g00284 Car20g00758 . . . . . . . . . . . . . . . . . Cone12ag1124 Cone8ag1168 . . Lsi10g00329 . Chy11g00419 . . . . . . . . . Sed05g3643 Cmo02g00428 Cmo20g00886 . . . . . Cpe05g01234 Bhi10g02061 Tan05g1365 Cmetu11g1444 . Hepe08g1048 . . Cla09g01736 Cam09g1830 Cec09g1890 Cco09g1983 . . Cre01g0680 . Csa02g01217 . Cme11g00480
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004689 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 4 1 42