Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g527 ATGTTTTCCTCATTCCAAAAATCCAACAAGTTTGACCAAATTCAGGCTAAATCCCAAACCCCCCTAAATTATTGCCAAACAAACAACGCCATAGGCTCTCCCGGTTTCCCCGCGCCTCCATATCTTACTCCTTACGTCTCCTCCCTACGCGTGTCGCCCCCAAATATCTACCACTGTTCTATCCACATATCCTCCTCCACTATTTATATATTCATCCCCTCGAATGTGCTTCCTCGGCCAAAGCTGAGCGCCATCCTGCGATCAGATCCGAAAAACGATGAAGAGGAGATGAACCGGCGCAGCAATGTGTCGATGGACAGCAGCGTTCCTCCGTCGAGCGGCGAGAATTCTCCCTTGGTTATGTCACCGTGGAACCATCCGTCTTCACCCTTCGCTAAGTCTCCATGGACGAAGTCTTCGTCTCCAATGGGCTTGCCGCAAAACGGGCTGATAGGGTCTATGGTTCGGGAGGAGGGTCATGTGTATTCCTTGGCTGCTACCGGGAATTTGCTGTACACGGGGTCCGATAGCAAGAACATACGTCTTCACAAGCGAATTGGAAGCTTACCCACCTTCAAGGACTTCCTCAAGAGCTCCATAAACCCAAAAAACTACGTGAAGGTCCGGCGGAAACGGAGCGTTCTCCGGATAAAGCATTTCGACGCTGTTTCTTGCTTGAGCTTGGACCAAGACCAGGGCCTTCTCTACTCGGGCTCTTGGGACAAGACTCTCAAGGTATGGAGAATCTCCGATTCCAAATGCTTGGAGTCCATCCGAGCCCACGACGATGCTATTAACGCGGTTGTCGCCGGCTTCGCAGGCCTTGTCTTCACCGGTTCGGCTGACGGGACGGTCAAAGTTTGGCACAGGCAGTTACACGGGAAAGGAACGAAGCACCTCTTTCTACAAACACTGCTGAACCAAGAAACTGCAATCACCTCCTTGGCCGTCAACACAGAAGGCGCCATCATATACTTTCTGTGCCTGGCCACCGCCGGAAACCTCGTGTTCAGCGGCTCCGCGGATAAGAGCATATGCGTGTGGAGAAGGGAAGGTGGTATTCACACCTGTTTGTCTGTTCTCACCGGCCACACCGGCCCAGTAAAGTGCTTGGCGGTGGAGGAAGATCAGGAGTCCACCAAGAGAGATCAGAGGTGGATTGTGTACAGTGGCAGCTTGGATAAGTCCGTGAAGATATGGAGAGTCTCGGAGCAGGCTCCGGATATACAGCAAATGAGGCTCATGGCACAGAACTATGTCCCTTCTCCCCTGTCCTCTCCTGCAAAATGA 1290 52.25 MFSSFQKSNKFDQIQAKSQTPLNYCQTNNAIGSPGFPAPPYLTPYVSSLRVSPPNIYHCSIHISSSTIYIFIPSNVLPRPKLSAILRSDPKNDEEEMNRRSNVSMDSSVPPSSGENSPLVMSPWNHPSSPFAKSPWTKSSSPMGLPQNGLIGSMVREEGHVYSLAATGNLLYTGSDSKNIRLHKRIGSLPTFKDFLKSSINPKNYVKVRRKRSVLRIKHFDAVSCLSLDQDQGLLYSGSWDKTLKVWRISDSKCLESIRAHDDAINAVVAGFAGLVFTGSADGTVKVWHRQLHGKGTKHLFLQTLLNQETAITSLAVNTEGAIIYFLCLATAGNLVFSGSADKSICVWRREGGIHTCLSVLTGHTGPVKCLAVEEDQESTKRDQRWIVYSGSLDKSVKIWRVSEQAPDIQQMRLMAQNYVPSPLSSPAK* 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5125032 5126676 - Vvi3g527 Vvi3g527 784202

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g527 429 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 182 325 IPR045182 -
Vvi3g527 429 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 327 416 IPR045182 -
Vvi3g527 429 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 79 184 IPR045182 -
Vvi3g527 429 MobiDBLite consensus disorder prediction 102 124 - -
Vvi3g527 429 SUPERFAMILY WD40 repeat-like 153 405 IPR036322 GO:0005515
Vvi3g527 429 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 79 184 - -
Vvi3g527 429 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 182 325 - -
Vvi3g527 429 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 327 416 - -
Vvi3g527 429 MobiDBLite consensus disorder prediction 88 124 - -
Vvi3g527 429 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 216 253 - -
Vvi3g527 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 258 288 IPR001680 GO:0005515
Vvi3g527 429 Gene3D - 324 422 IPR015943 GO:0005515
Vvi3g527 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 216 257 IPR001680 GO:0005515
Vvi3g527 429 SMART WD40_4 308 349 IPR001680 GO:0005515
Vvi3g527 429 SMART WD40_4 147 184 IPR001680 GO:0005515
Vvi3g527 429 SMART WD40_4 251 289 IPR001680 GO:0005515
Vvi3g527 429 SMART WD40_4 354 401 IPR001680 GO:0005515
Vvi3g527 429 SMART WD40_4 210 248 IPR001680 GO:0005515
Vvi3g527 429 Pfam WD domain, G-beta repeat 218 247 IPR001680 GO:0005515
Vvi3g527 429 Pfam WD domain, G-beta repeat 253 288 IPR001680 GO:0005515
Vvi3g527 429 Pfam WD domain, G-beta repeat 356 400 IPR001680 GO:0005515
Vvi3g527 429 Pfam WD domain, G-beta repeat 312 348 IPR001680 GO:0005515
Vvi3g527 429 Gene3D - 46 323 IPR015943 GO:0005515
Vvi3g527 429 PRINTS G protein beta WD-40 repeat signature 235 249 IPR020472 -
Vvi3g527 429 PRINTS G protein beta WD-40 repeat signature 276 290 IPR020472 -
Vvi3g527 429 PRINTS G protein beta WD-40 repeat signature 388 402 IPR020472 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g527 - - - vvi:100248616 656.366
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g527 Vvi18g860 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g527 . Blo15g00718 Bda06g01024 Bda08g01318 Bpe07g00404 Bpe12g00071 . Bma12g00483 Cmo19g00652 Cmo11g01329 . . . . Sed11g0992 . . Bhi05g01171 Tan02g1913 Cmetu03g1602 . Hepe02g0551 . . Cla02g00560 Cam02g0588 Cec02g0589 Cco02g0600 Clacu02g0586 Cmu02g0584 Cre02g0914 . . . . . Csa07g00816 . . . Blo13g00559 Bda15g00021 Bda14g00532 . . . . . . . Cma11g01780 Cma19g00639 . . . . . . . . . . . . . . . . . . . . Chy01g00013 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009507 6 1 2 1 2 1 0 1 1 1 1 1 2 0 1 2 1 0 0 1 1 1 1 1 0 0 1 1 1 1 33