Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g530 ATGTCCTCTTCTTCTTCCTCTCTTCCCCTCAATTTCGTCAACTCATCTTCATCATCAAAACTTCCACTGCGATCCATCCCGGGTGATTGTGGCTCACCCTTCTTTGGGCCCATTAAGGATCGTTTCGACTACTTCTACAATGAAGGCCGTGACCAGTTCTTCAGAACTCGCATGCAGAAATATCAATCCACGGTCTTCAGAGCCAACATGCCACCCGGCCCTTTCATGGCTTTCAACCCTAATGTCGTTGTCCTCCTCGACGCCATCAGCTTTCCCATCCTTTTCGACACCTCCAGAATTGAAAAGAGAAATGTCCTCGACGGCACATACATGCCCTCCACCGCCTTCACTGGTGGCTACCGTGTCTGTGCATATCTTGACCCTTCCGAGCCCAACCACGCCCTTCTCAAACGCTTTTTCACGTCCTCGCTCGCAGCTCGACACCATAACTTCATTCCTGTGTTTCGTAGCTGCTTAACAGAGCTCTTCACCACCCTCGAAGACGATAAGATTTACTTCTACACACCTTTCCCTTACCCTCATTATTCCAGCCAAACTGTCCTGCATTGCATCATCGTATCACAGTTATCACCATCTATATCACCTACATTTCTTGAATTTGGCTTTCTTCTACTTCATACAAACACCTTCACCTACAATCCAATAATGTCTTCATCTTCTGATAAAAACGATCTCAATTCATCTTCTTCATTGTCTAAACTTCCATTACGAAAGATTCCAGGCGATTATGGCTTGCCCTTCTTTGGTGCAATAAAGGATCGTCTTGATTACTTCTACAAACAGGGGCGGGAGGAGTTCTTCAACGCTCGAATGCACAAGTATCAATCCACCGTTTTCAGAGCCAACATGCCACCTGGTCCTTTCATGGCTTCCAACCCTAATGTCATCGTCCTCCTCGACTCCATCAGCTTTCCCATCCTATTCGACACCTCCAAAGTTGAAAAGAGAAACGTCCTTGACGGCACATACATGCCCTCCACCGCCTTCACTGGTGGTTATCGAGTCTGTGCATATCTCGACCCTTCCGAAACCAACCACGCTCTTCTCAAGCGCTTGTTCATGTCAGCACTTGCTGCTCGGCATCATAACTTCATTCCCCTGTTTCAGACTGCGCTCGGTTCACAAGGACCCAGTATTGTTACAAAATGGTTGTTCTTCCAACTTGCACCTCTCATTACACTTGGGTTGTCCTTGTTACCAAACTTTGTAGAAGATCTACTTCTACACACCTTTCCCTTACCGTCAATATTCGCTTTGTTTCCCTCTTTGATCAAGTGGGTTGGCTCAGCAGGAGAGAAGCTACACCGCGAACTCGCTGATGAAATAAGGACCGTTGTTAAAGCGGAGGGAGGAGTGTCTTTTGCAGCTCTTGAGAAGATGAGTTTGACCAAGTCAGTGGTATATGAGGCTCTGAGGATTGATCCTCCGGTTCCATTCCAGTACGGAAAGGCCAAGGAGGATATGGTGATCCACAGCCATGATGCTGCATTTGAGATCAAGAAAGGGGAGATGATATTCGGATATCAGCCATTTGCCACCAAGGATCCTAAAGTTTTCGACAATCCTGAGGAGTTCATGGGCAACAGGTTTATGGGGGAGGGAGAGAGACTGCTCAAGTACGTGTATTGGTCTAATGGACGTGAGTCAGGTAATCCGACGGTGGAAAATAAACAGTGTGCAGGGAAGGATCTGGTGCTGCTGCTCTCCAGGGTAATGCTGGTGGAGTTCTTCCTCCGCTATGACACGTTCGACATTGAATCCGGAACCTTGTTGTTGGGATCATCAGTGACGTTCAAGTCGATAACCAAGGCCACGGACAGTTAG 1845 47.48 MSSSSSSLPLNFVNSSSSSKLPLRSIPGDCGSPFFGPIKDRFDYFYNEGRDQFFRTRMQKYQSTVFRANMPPGPFMAFNPNVVVLLDAISFPILFDTSRIEKRNVLDGTYMPSTAFTGGYRVCAYLDPSEPNHALLKRFFTSSLAARHHNFIPVFRSCLTELFTTLEDDKIYFYTPFPYPHYSSQTVLHCIIVSQLSPSISPTFLEFGFLLLHTNTFTYNPIMSSSSDKNDLNSSSSLSKLPLRKIPGDYGLPFFGAIKDRLDYFYKQGREEFFNARMHKYQSTVFRANMPPGPFMASNPNVIVLLDSISFPILFDTSKVEKRNVLDGTYMPSTAFTGGYRVCAYLDPSETNHALLKRLFMSALAARHHNFIPLFQTALGSQGPSIVTKWLFFQLAPLITLGLSLLPNFVEDLLLHTFPLPSIFALFPSLIKWVGSAGEKLHRELADEIRTVVKAEGGVSFAALEKMSLTKSVVYEALRIDPPVPFQYGKAKEDMVIHSHDAAFEIKKGEMIFGYQPFATKDPKVFDNPEEFMGNRFMGEGERLLKYVYWSNGRESGNPTVENKQCAGKDLVLLLSRVMLVEFFLRYDTFDIESGTLLLGSSVTFKSITKATDS* 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5156560 5164408 - Vvi3g530 Vvi3g530 784205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g530 614 PRINTS E-class P450 group IV signature 467 483 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g530 614 PRINTS E-class P450 group IV signature 504 518 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g530 614 PRINTS E-class P450 group IV signature 520 538 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g530 614 Gene3D Cytochrome P450 237 613 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g530 614 PANTHER HYDROPEROXIDE LYASE 240 378 - -
Vvi3g530 614 PANTHER HYDROPEROXIDE LYASE 376 422 - -
Vvi3g530 614 PANTHER HYDROPEROXIDE LYASE 20 174 - -
Vvi3g530 614 PANTHER HYDROPEROXIDE LYASE 425 592 - -
Vvi3g530 614 MobiDBLite consensus disorder prediction 1 21 - -
Vvi3g530 614 Pfam Cytochrome P450 443 542 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g530 614 SUPERFAMILY Cytochrome P450 21 170 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g530 614 PANTHER CYTOCHROME P450 26 20 174 - -
Vvi3g530 614 PANTHER CYTOCHROME P450 26 240 378 - -
Vvi3g530 614 PANTHER CYTOCHROME P450 26 376 422 - -
Vvi3g530 614 PANTHER CYTOCHROME P450 26 425 592 - -
Vvi3g530 614 Gene3D Cytochrome P450 21 200 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g530 614 SUPERFAMILY Cytochrome P450 240 590 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g530 K01723 AOS; hydroperoxide dehydratase [EC:4.2.1.92] - vvi:100253713 714.916
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g530 . . . Bda08g01314 . . . . . . . . . . Sed11g0996 . . Bhi05g01173 Tan02g1916 Cmetu03g1973 . Hepe02g0550 . . Cla02g00558 Cam02g0586 Cec02g0587 Cco02g0598 Clacu02g0584 Cmu02g0582 Cre02g0912 . . . . . . . Cme01g00010 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00011 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003219 0 2 0 0 0 2 2 2 2 2 1 2 2 2 2 2 2 3 2 2 2 1 2 2 2 2 2 2 1 3 51