Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g535 ATGGATGAAGTACCTGGCTCGGTGGGGACCAGTGCTAGCTTCTCTTTGAGATTGGGCCAGACCATATTCTCTTCTGCTTCTCTTCTTTTCATGTCTTTGGGGGTTGAGTTCTATAGCTACACAGCTTTCTGCTATTTGGTTACAATCATGGGTTTGGTTATTCCTTGGAGTTTCACTTTGGCACTGGTGGATGGATACTCTGTCCTGGTTAAATGCCCTCTCCGCCAGCCAGGAATACTGCTGATCATTGTCCTAGGAGATTGGGTCTTATCAATTCTCACACTTGCTGCAGCTTCCTCAACACTTGGTGTGGTCGACGTCCTGCTCAAATCTGATGCCTCCTACTACCCTATAAAGTTTTGCAGTAGATATCAGATATCCGCAGCTATGGCCTTCTTGTCCTGGTTTCTGTCTTTTGGTTCATTTCTTTTCAATCTTTGGTTGCTCCCCACATTGTGA 459 45.75 MDEVPGSVGTSASFSLRLGQTIFSSASLLFMSLGVEFYSYTAFCYLVTIMGLVIPWSFTLALVDGYSVLVKCPLRQPGILLIIVLGDWVLSILTLAAASSTLGVVDVLLKSDASYYPIKFCSRYQISAAMAFLSWFLSFGSFLFNLWLLPTL* 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5229381 5231737 + Vvi3g535 Vvi3g535 784210

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g535 152 PANTHER CASP-LIKE PROTEIN 5C3 1 151 - -
Vvi3g535 152 Pfam Casparian strip membrane protein domain 9 137 IPR006702 -
Vvi3g535 152 PANTHER CASP-LIKE PROTEIN 5B3 1 151 IPR045009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g535 - - - vvi:100258936 283.493
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g535 Blo02g00787 Blo15g00714 Bda06g01015 Bda08g00907 Bpe07g00411 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1131 Cone10ag1141 . . . . . . . . . . . . . . . . . . . . . Bhi10g02042 . . . Hepe08g1032 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002444 5 2 2 1 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 60