Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g536 ATGGCGGTTTCTAAGGTTAAGCAAATTTTATTCACACCCCTAGCCCGTAAAACCCTTTGTCTCTCCTTGTCTTCCTTGCCATCCGATCAAAACCCTACCAAAACCCTAATTTCAACGGCCGTTTCAATTCTCCGACACCAACGTTCAAAGTCCCGGTGGAGCCATCTCCAATCTCTGTTCCCGAAAGGCTTCACCCCCACCGAAGCTTCCCAAATTGTTCTCCAAATAAAAAACAATCCACATCTTGCTCTCTCCTTTTTCCTCTGCTATAGTGTTCTAATGGCAGCATTTTGTGATGAAGGGAGGATGGGAGAGGTTGAGAAGTTATGGGAAGAAATGCGAATGAAGAAAATGGAGCATGATATCATGGCGTATAACACAATAATCGGTGGGTTTTGTAGAATTGGGGAGATTGAGAGGGGAGAAGAGCTTTTCAGAGAAATGGAATTGAGTGGGATTCAGAGTACTTGTGTTACTTACGAGCATCTTATTAATGGGTATTGTGAAATTGGAGATGTTGATTCAGCAGTTCTTTTGTACAAGGATATGTGCAGGAAAGGTTTCAGGGCAGAGGCAAGAACTGTTGATGGGATGATTCTCTTACTTTGTAACAATAGGAGGGTTCATGAAGCTTTGAAGTTATTGAGGGTTGCAATGGGAAATGTTGAATTTGCGCCAAGGGGGAAGAGTTATGAGACTCTGATAAAGGGTTTTTGCGAAGAGGGGAAGATGGAAGAAGCATCGAAACTTCAATCAGAGATGGTGGGGAAAGGGTTCAAACCGACTCTTGAGATTTATAGTGCTTTTATTGATGGTTATATGAAACAAGGGAACAAGGAAATTGCAGAAACCTTAAGGAAGGAAATGTTCGAAACTCAAATGCAGCAGGAAGAGAATTAG 900 42.22 MAVSKVKQILFTPLARKTLCLSLSSLPSDQNPTKTLISTAVSILRHQRSKSRWSHLQSLFPKGFTPTEASQIVLQIKNNPHLALSFFLCYSVLMAAFCDEGRMGEVEKLWEEMRMKKMEHDIMAYNTIIGGFCRIGEIERGEELFREMELSGIQSTCVTYEHLINGYCEIGDVDSAVLLYKDMCRKGFRAEARTVDGMILLLCNNRRVHEALKLLRVAMGNVEFAPRGKSYETLIKGFCEEGKMEEASKLQSEMVGKGFKPTLEIYSAFIDGYMKQGNKEIAETLRKEMFETQMQQEEN* 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5234027 5235506 - Vvi3g536 Vvi3g536 784211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g536 299 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 18 88 - -
Vvi3g536 299 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 89 298 - -
Vvi3g536 299 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 156 190 IPR002885 -
Vvi3g536 299 Pfam PPR repeat 89 116 IPR002885 -
Vvi3g536 299 Pfam PPR repeat 265 290 IPR002885 -
Vvi3g536 299 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 86 120 IPR002885 -
Vvi3g536 299 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 121 155 IPR002885 -
Vvi3g536 299 Gene3D Tetratricopeptide repeat domain 66 202 IPR011990 GO:0005515
Vvi3g536 299 Gene3D Tetratricopeptide repeat domain 203 298 IPR011990 GO:0005515
Vvi3g536 299 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 18 88 - -
Vvi3g536 299 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 89 298 - -
Vvi3g536 299 Pfam PPR repeat family 121 168 IPR002885 -
Vvi3g536 299 Pfam PPR repeat family 230 262 IPR002885 -
Vvi3g536 299 TIGRFAM PPR: pentatricopeptide repeat domain 158 189 IPR002885 -
Vvi3g536 299 TIGRFAM PPR: pentatricopeptide repeat domain 89 121 IPR002885 -
Vvi3g536 299 TIGRFAM PPR: pentatricopeptide repeat domain 230 262 IPR002885 -
Vvi3g536 299 TIGRFAM PPR: pentatricopeptide repeat domain 124 154 IPR002885 -
Vvi3g536 299 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g536 - - - vvi:100267626 426.402
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g536 Blo02g00788 . . Bda08g00906 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1132 Cone10ag1142 Lsi10g00648 . . . . . . . . . . . . . . . . . . . . Bhi10g02041 . . . . . . . . . . . . . . . . Cme11g00226
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012888 2 1 1 1 0 0 1 1 0 1 1 0 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 27