Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g540 ATGGATGTATCAAGTGTTGTCAATAAGAACCCATCTTTCAAAATCATCAGCTTTTCCCATTATCCAACCATGAGCCTCATCAGTGACCAAAGTCCTGCTTCAGATGCCACCATTTGCTTCACAGAGGAGCAAGAAGCTCTGGTGGTGAAGTCATGGAATTCAATGAAGAAGAATTCTGGAGAGTTGGGTCTTAAATTCTTCTTAAAAATATTTGAGATTGCACCATCAGCTCAAAAACTGTTCTCATTCCTGAAAGACTCAAAGGTTCCCCTAGAGAAGAACCCAAAGCTCAAGTCCCATGCTATGGCTGTTTTTGTTATGACTTGTGAATCAGCTGTTCAACTTCGAAAAGCTGGCAAAGTGACAGTGAGAGACTCTACCCTGAAGAAACTAGGTTCTGTTCACTACAAATCTGGTGTACTTGATGAACACTATGAGGTTACAAAGTTTGCATTGTTGGAAACAATAAAGGAAGCAGTTCCTGAAATGTGGTCACCAGAAATGAAGAATGCATGGGCACAAGCTTATGATCAGTTGGTTGTTGCTATCAAATCAGAGATGAAGCCGTCCTCTTAG 576 40.97 MDVSSVVNKNPSFKIISFSHYPTMSLISDQSPASDATICFTEEQEALVVKSWNSMKKNSGELGLKFFLKIFEIAPSAQKLFSFLKDSKVPLEKNPKLKSHAMAVFVMTCESAVQLRKAGKVTVRDSTLKKLGSVHYKSGVLDEHYEVTKFALLETIKEAVPEMWSPEMKNAWAQAYDQLVVAIKSEMKPSS* 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5258909 5261637 - Vvi3g540 Vvi3g540 784215

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g540 191 ProSitePatterns Plant hemoglobins signature. 94 105 IPR019824 GO:0019825|GO:0020037
Vvi3g540 191 CDD class1_nsHb-like 40 188 - -
Vvi3g540 191 PANTHER LEGHEMOGLOBIN-RELATED 5 190 IPR001032 GO:0019825|GO:0020037
Vvi3g540 191 ProSiteProfiles Globin family profile. 40 188 IPR000971 GO:0020037
Vvi3g540 191 Pfam Globin 65 182 IPR000971 GO:0020037
Vvi3g540 191 SUPERFAMILY Globin-like 35 188 IPR009050 -
Vvi3g540 191 Gene3D Globins 38 186 IPR012292 GO:0019825|GO:0020037
Vvi3g540 191 PANTHER HEMOGLOBIN 1, GLB1,NSHB1,ATGLB1,HB1 5 190 - -
Vvi3g540 191 PRINTS Plant globin signature 41 58 - -
Vvi3g540 191 PRINTS Plant globin signature 66 86 - -
Vvi3g540 191 PRINTS Plant globin signature 94 122 - -
Vvi3g540 191 PRINTS Plant globin signature 159 185 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g540 - - - vvi:104878801 331.257
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g540 . . . Bda08g00904 . . Bma05g00503 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007931 2 0 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 2 36