Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g542 ATGGATGAAGAGGGCATTGGGGTGGTGTTGGCTAGAGCGTCGGAGCTTCGATCCAAGTTCACTAACTGCATCCACAAAGCCACTACCCAAGGAGATGAAGTTGAAGAAGGAGAAGAGAAGGAAGAGGGAGAGGCTGCTTCGGAGACCCTTTTGAACATTCGTGATGCCCTTGAATCCCTCGAGTCCCAGCTCTCTTCCTTGCAGGGTCTACAACAGCAGCAGTGGTATGAGAGAGAAGCTGCCTTGGCTGAGATTGATTACAGTCGCCAGAAGTTACTCAAGAAGCTCAAGCAGTATAAAGGGGAGGACTTGGAAGTGATTCACGAGGCTTCTGCATTTGCAAGTGAGACAGTGGAGCACAGCAATGATCTCCTGCTGCCCCCATATCCAAGCCGTCCCCCACGCTCCCTTGTTGCAGACAATGGTCATATGTCACACTTCCCTTTCATGCGGAATCAGAGAGAAATCAAATGCACTCCGGATCCAAAAACACATCCAAAGGGCTGGGAATTTTCTTCAATGGCGCAAAGATGGTGCTTACCCTAG 546 50.18 MDEEGIGVVLARASELRSKFTNCIHKATTQGDEVEEGEEKEEGEAASETLLNIRDALESLESQLSSLQGLQQQQWYEREAALAEIDYSRQKLLKKLKQYKGEDLEVIHEASAFASETVEHSNDLLLPPYPSRPPRSLVADNGHMSHFPFMRNQREIKCTPDPKTHPKGWEFSSMAQRWCLP* 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5264338 5268000 - Vvi3g542 Vvi3g542 784217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g542 181 PANTHER PLASTID DIVISION PROTEIN PDV2 1 153 - -
Vvi3g542 181 Coils Coil 50 70 - -
Vvi3g542 181 PANTHER PLASTID DIVISION PROTEIN PDV2 1 153 IPR038939 GO:0010020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g542 - - - vri:117911304 239.965
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g542 Blo02g00793 Blo15g00712 . Bda08g00903 Bpe07g00413 . . Bma12g00495 Cmo19g00655 Cmo11g01327 . Cma20g00866 . . Sed01g0313 Cpe04g00254 Cpe15g00518 Bhi05g01178 Tan02g0851 Cmetu11g2117 . Hepe02g0547 . . Cla02g00556 Cam02g0582 Cec02g0584 Cco02g0594 Clacu02g0581 Cmu02g0578 Cre02g0908 . . . Cone10ag1147 . . . Cme01g00007 . . . . . . . . Sed05g3633 . Cmo20g00876 Cma11g01782 Cma19g00642 Car11g01069 . . . Bhi10g02039 Tan05g1340 Cmetu11g1828 . . . . . . . . . . . Lsi11g01054 . Chy01g00008 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002686 2 2 1 2 1 2 4 2 2 2 0 1 3 1 2 3 2 2 4 2 2 2 1 2 2 2 1 3 2 1 58