Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g543 ATGGATCAAAATCTTCAGTACCATGATATGGGACAATTCAGAAGCTCTGTTGAAGCAAAGAAGCAGTCCCCAAGAGCTGAGGTTCAGAATTCTTTGAAGCAAGAGATTCTACAGCTTCAGAAGGGATTACAAGACCAATTTCTGGTTCGACGTGCATTAGAGAAGGCATTGGGTTATAGGTCTTTCTCCCATGATACCATAAATGCAAACTCAGTGCCCAAGCCTGCTGAGAATCTGATCAAGGAAATTGCGGTTTTGGAGCTGGAAGTTGTCTACCTGGAACAATATCTTCTCTCATTGTACCGGAAAACATTTGATCGACAAATTTCATCCGTTTCTACCGTGGATGATAGAATAAAGTCAACTTCAACTGCCCATAGAAGGATGTTTCAAGAAGTTTCTGGAGATAAGATCATATCAAAGACTGAAAATTCAGTTATTCACTCTAGCCATCTTTTGTCACCCCGAGATTCAATTGACAATCCACCAAAGGAATGCAATGACATTTGGGGACCTCATAAGTTGTTGGATTCTAGCATTCATCGCAGCCATTCCTCCCTATCTCAACGTTCAACTTGTCCGATTAGAACTTCTCCTTCAATGCAAACTCTAGCCAAAGCTGTAGACTCGTACCATTCTCTACCTTTGTCCATGCTGGAGCGTGCTGACAATGCTCCTTCAAATGCAATCAGCCTGGCAGAGCATCTTGGTACCAACATTTGTGATCATGATCCAATGACACCAAACCGGCTCTCTGAGGAGATGATTAAGTGCATCTCAGCCATATATTGCAGACTTGCAGACCCCCCTTTGTCCAATAATGATTATCCTTCCTCTCCTATTTCCTCCCCATTATCAATGAATGATGGACCATACTGCACAATGGTGGAAGTGAAATGGATTTGTAGAGACAGTAAAAAGTTAAGAGACATTGGGCCCATGCTACAAAAATTTCGGTCACTTGTTTATCAGTTGGAACAAGTTGATCCTAGAAAGATGAGACATGAGGAGAAGCTAGCTTTCTGGATTAATGTACACAATGCACTAATAATGCATGCATTCTTGGTTTATGGGATTCCACAAAATAATCTAAAGAGAATTTCTTTACTTCTCAAGGCTGCATATAATGTGGGAGGTCACACCATAAGCGTAGACATGATACAGAATTCTATTTTAGGATGCAGATTGGCTCGCCCTGGACAATGGCTCTGGTCGTTGTTTTCATCAACAAAGAAATTCAAGGCTCGAGATGAGAGGAAAGCATATGGCATTGAGCACCCTGAGCCTCTCCTGCATTTTGCACTCTGTTCAGGAAGCCATTCTGATCCTTCGGCCCGCATATACACACCAAAGAACGTGTTCCAGGAGTTGGAAGTTGCAAAAGAAGAGTACATCCGAACCGCCTTCAGGTTACACAAGGGACAGAAAGTTCTTCTACCAAAGCTTGTGGAGTCTTTTTCCAAGGAATCTGGTTTGTGTCAAGCTGATCTGGTGGAGATCATTGAGCATTGTATGCCTAACAGCTTGGGAAAGGGCATCCACTGGGGTCAGCATGGAAAATTTTGGAAGAGCATAGAATGGACCCCTCACAACTTCGCATTCCGTTATCTGCTTTCAAGAGAGCTACCAAAGTGA 1635 42.75 MDQNLQYHDMGQFRSSVEAKKQSPRAEVQNSLKQEILQLQKGLQDQFLVRRALEKALGYRSFSHDTINANSVPKPAENLIKEIAVLELEVVYLEQYLLSLYRKTFDRQISSVSTVDDRIKSTSTAHRRMFQEVSGDKIISKTENSVIHSSHLLSPRDSIDNPPKECNDIWGPHKLLDSSIHRSHSSLSQRSTCPIRTSPSMQTLAKAVDSYHSLPLSMLERADNAPSNAISLAEHLGTNICDHDPMTPNRLSEEMIKCISAIYCRLADPPLSNNDYPSSPISSPLSMNDGPYCTMVEVKWICRDSKKLRDIGPMLQKFRSLVYQLEQVDPRKMRHEEKLAFWINVHNALIMHAFLVYGIPQNNLKRISLLLKAAYNVGGHTISVDMIQNSILGCRLARPGQWLWSLFSSTKKFKARDERKAYGIEHPEPLLHFALCSGSHSDPSARIYTPKNVFQELEVAKEEYIRTAFRLHKGQKVLLPKLVESFSKESGLCQADLVEIIEHCMPNSLGKGIHWGQHGKFWKSIEWTPHNFAFRYLLSRELPK* 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5269487 5273645 - Vvi3g543 Vvi3g543 784218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g543 544 PANTHER TERNARY COMPLEX FACTOR MIP1 LEUCINE-ZIPPER PROTEIN 290 542 - -
Vvi3g543 544 PANTHER TERNARY COMPLEX FACTOR MIP1 LEUCINE-ZIPPER PROTEIN 7 288 - -
Vvi3g543 544 Pfam Protein of unknown function, DUF547 330 465 IPR006869 -
Vvi3g543 544 Pfam Leucine-zipper of ternary complex factor MIP1 26 106 IPR025757 -
Vvi3g543 544 PANTHER UNCHARACTERIZED 7 288 - -
Vvi3g543 544 PANTHER UNCHARACTERIZED 290 542 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g543 - - - vvi:100255635 1044.26
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g543 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1128 Cone8ag1175 . . . Csa07g00820 . . Blo04g00500 . . Bda14g00534 . . Bma03g01401 . . . . . . . Car19g00488 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009608 1 2 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 32