Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g544 ATGGAGGATTATGCAAACAGCGACGAAGAATACTACTATTCGGATCGAGACTCGTTCGACGGGCTCGTAAATGAGGAATCTGATTTTCAGTGGGTCCCCCCCAAGGCTCCTTCCAGTCAGGTAATCACGAAAGAATCCCTTCTGACTGCACAGAGGGATGATTTGCGGAGAGTAATGGACTTGTTATCATTAAGAGAACATCATGCAAGGACGTTGCTCATCCATCACCGGTGGGATGTGGAGAAGTTATTTGCAGTGATGGTAGAGAAGGGGAAACCATGCTTATTTGCTGAAGCAGGTGTTCCTTTAATGGAGCATCAGATTGTCCCCTTACCATTGTCTTCGTCGACATTAATGTGTGATATTTGCATGGAAGCTGTATGTAGTAAGGACTCCACAAAAATGGACTGTGGCCACTGCTTTTGCAATAACTGTTGGACAGAGCATTTTGTTGTGAGGATAAATGAGGGTCAAAGCAGACGCATTAGGTGCATGGCATACAAATGCAATGCTATTTGTGATGAAGCTATTGTCAGAAATCTAGTTGGTAGAAGGCATCCTGATCTGGCAGAGAAATTTGATCGTTTTCTTCTTGAATCATATATTGAGGACAACAAAATGGTTAAGTGGTGCCCAAGTGCTCCGCATTGTGGAAATGCAATCCGGGTTGAGGATGATGAATTTTGTGAGGTAGAATGTTCATGCGGTTTACAGTTTTGCTTCAGTTGCTTATCAGAGGCACACTCGCCTTGTTCATGTTTGATGTGGGAGTTTTGGACCAAGAAATGCCGAGATGAATCAGAAACAGTCAATTGGATCACAGTGCATACAAAGCCTTGTCCAAAGTGTCACAAACCTGTGGAGAAGAATGGTGGCTGCAACCTAGTGAGCTGTATCTGTGGGCAAGCATTTTGTTGGCTGTGTGGTGGAGCTACTGGTCGAGACCATACTTGGTCTAGTATAAGTGGTCACAGTTGTGGTCGCTACAAAGAAGACCGAGAGAAGAAGGCTGAGCGTGCGAAGCGGGACCTCTATCGCTACATGCATTATCATAATCGTTACAAAGCTCATACTGATTCCTTTAAGCTTGAAAGTAAACTGAAGGACACTATAAAAGTGAAGGTGTCAAATTCTGAAGAGAAGGAATCTACACTCAGAGATTTCAGCTGGGTAACAAATGGACTATACAGACTCTTCAGATCAAGGCGGGTTCTTTCATATTCATATCCATTTGCATTTTATATGTTTGGGGATGACCTGTTCAATGATGAGATGACAAAGGAGGAAAGGGAAATAAAACAGCATTTATTTGAAGACCAGCAGCAGCAGCTTGAGGCAAATGTCGAGAAGCTCTCCAAGTTCATTGAGGAGCCATTCGACCAGTATGAAGAGGATAAAGTGAGAGACATAAGGATGCAAGTCATCAACCTATCAGTGATCACGGATACCCTCTGTAAGAAAATGTATGAATGCATTGAGAATGATCTATTGGGTTCTCTCCAACATGGCATCCACAATATTGCTCCATATAAGTCAAAGGGCATTGAAAGGGCATCAGAACTTATAACCTGTCAGAGCAATAAAGCCAGCAATGCTGATAACTGTCCATCTTCAGAAAATGGCACAGATGGAGGGACAGCAGAATTTGATCGACCTTCAGGCTCTGGGAGTTCATATGAGAGTGGATATTCTTCTAGGAAGCGGGCTAGAAAGGAGGGTCTCGGAGGCATTGATCTCAACTTGCCAGCAGAGGTCGTGGATAGGAACTAA 1770 43.62 MEDYANSDEEYYYSDRDSFDGLVNEESDFQWVPPKAPSSQVITKESLLTAQRDDLRRVMDLLSLREHHARTLLIHHRWDVEKLFAVMVEKGKPCLFAEAGVPLMEHQIVPLPLSSSTLMCDICMEAVCSKDSTKMDCGHCFCNNCWTEHFVVRINEGQSRRIRCMAYKCNAICDEAIVRNLVGRRHPDLAEKFDRFLLESYIEDNKMVKWCPSAPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWEFWTKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGRDHTWSSISGHSCGRYKEDREKKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKDTIKVKVSNSEEKESTLRDFSWVTNGLYRLFRSRRVLSYSYPFAFYMFGDDLFNDEMTKEEREIKQHLFEDQQQQLEANVEKLSKFIEEPFDQYEEDKVRDIRMQVINLSVITDTLCKKMYECIENDLLGSLQHGIHNIAPYKSKGIERASELITCQSNKASNADNCPSSENGTDGGTAEFDRPSGSGSSYESGYSSRKRARKEGLGGIDLNLPAEVVDRN* 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5278121 5285565 - Vvi3g544 Vvi3g544 784219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g544 589 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 5 516 IPR031127 GO:0004842|GO:0016567
Vvi3g544 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 205 IPR013083 -
Vvi3g544 589 SUPERFAMILY RING/U-box 115 203 - -
Vvi3g544 589 Gene3D - 249 497 - -
Vvi3g544 589 ProSiteProfiles TRIAD supradomain profile. 116 330 IPR044066 -
Vvi3g544 589 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 5 516 - -
Vvi3g544 589 SUPERFAMILY RING/U-box 191 259 - -
Vvi3g544 589 MobiDBLite consensus disorder prediction 527 544 - -
Vvi3g544 589 Pfam Ariadne domain 330 589 IPR045840 -
Vvi3g544 589 SUPERFAMILY RING/U-box 261 329 - -
Vvi3g544 589 ProSiteProfiles Zinc finger RING-type profile. 120 168 IPR001841 -
Vvi3g544 589 SMART ibrneu5 261 326 IPR002867 -
Vvi3g544 589 SMART ibrneu5 191 253 IPR002867 -
Vvi3g544 589 Pfam IBR domain, a half RING-finger domain 191 253 IPR002867 -
Vvi3g544 589 MobiDBLite consensus disorder prediction 527 570 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g544 Vvi18g871 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g544 K11968 - vvi:100257215 1218.37